Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C02
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
 Frame = -3

Query: 694  PXQTXTXXXPPXGXPXXGXXPXKXXXXEAXEXPEXGPXPXSPRXPXXXLXRXPXPPP-XE 518
            P    +   PP   P  G  P       A   P   P   +P  P   +   P PPP   
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKP---AAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216

Query: 517  PPXXTXS 497
            PP  T S
Sbjct: 1217 PPVPTPS 1223


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 589 GPXPXSPRXPXXXLXRXPXPPPXEPPXXTXSG 494
           GP P  P  P       P PPP  PP  +  G
Sbjct: 760 GPPPPPP--PPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,516
Number of Sequences: 5004
Number of extensions: 11101
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)