Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_C02
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 29 4.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 7.4
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 28 7.4
02_04_0400 - 22608519-22608844,22609044-22609122 28 7.4
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 28 9.8
10_08_0237 - 16085539-16086120 28 9.8
07_03_1382 - 26170563-26170631,26171151-26171843 28 9.8
07_03_0560 + 19479597-19480667 28 9.8
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 28 9.8
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 9.8
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.8
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 598 PEXGPXPXSPRXPXXXLXRXPXPPP 524
P P P +P P L R P PPP
Sbjct: 71 PRRSPAPSAPTTPARRLLRLPFPPP 95
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 598 PEXGPXPXSPRXPXXXLXRXPXPPPXEPP 512
P P P P P L P PPP PP
Sbjct: 351 PPPPPPPPPPPPPPPKLNTAPKPPPPPPP 379
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = -3
Query: 667 PPXGXPXXGXXPXKXXXXEAXEXPEXGPXPXSPRXPXXXLXRXPXPPPXEPP 512
PP G P + P G P P L P PPP PP
Sbjct: 13 PPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPP 64
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/52 (26%), Positives = 16/52 (30%)
Frame = -3
Query: 667 PPXGXPXXGXXPXKXXXXEAXEXPEXGPXPXSPRXPXXXLXRXPXPPPXEPP 512
PP P P + P+ P P P P PPP PP
Sbjct: 63 PPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPP 114
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -3
Query: 598 PEXGPXPXSPRXPXXXLXRXPXPPPXEPP 512
P P P P P P PPP PP
Sbjct: 43 PRFAPPPPQPTLPPPPPRTLPPPPPPPPP 71
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 586 PXPXSPRXPXXXLXRXPXPPPXEPP 512
P P P P L P PPP +PP
Sbjct: 50 PQPTLPPPPPRTLPPPPPPPPPQPP 74
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = +3
Query: 513 GGSFGGGXGXRXRXXXGXLGXXGXGPXSGXSXASSXXXFXGXXPXXGXPXGGXXXVXVWX 692
GG GGG G G G G G G G G GG W
Sbjct: 39 GGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWN 98
Query: 693 GXHXXXXP 716
G + P
Sbjct: 99 GGYYPPGP 106
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = -3
Query: 667 PPXGXPXXGXXPXKXXXXEAXEXPEXGPXPXSPRXPXXXLXRXPXPPPXEPP 512
PP P K + E P P P P R P PPP +PP
Sbjct: 93 PPSLPPPVNTGKKKWKKDKRKEIP---PPPPLAETPPPMNERPPTPPPVQPP 141
>10_08_0237 - 16085539-16086120
Length = 193
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 513 GGSFGGGXGXRXRXXXGXLG-XXGXGPXSGXSXASS 617
GGS GGG G + G G G G SG S A+S
Sbjct: 115 GGSGGGGGGGQGNGNYGSTGQGSGSGTGSGYSDANS 150
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 595 EXGPXPXSPRXPXXXLXRXPXPPPXEPPXXTXSGXHXXIRA 473
+ GP P P P P PPP PP T G RA
Sbjct: 181 QLGPPPPPPPQPSGDANENPPPPP--PPLRTGVGNSDGRRA 219
>07_03_0560 + 19479597-19480667
Length = 356
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 513 GGSFGGGXGXRXRXXXGXLGXXGXGPXSG 599
GG FGGG G G LG G G G
Sbjct: 106 GGGFGGGVGGGGGGEGGGLGGGGGGGLGG 134
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 513 GGSFGGGXGXRXRXXXGXLGXXGXGPXSGXSXASSXXXFXGXXPXXGXP 659
GG GG G R R G G G GP G + A + G P
Sbjct: 62 GGKKCGGGGGRRRGGRGRGGRAGAGPGPGLAAAPAVVVAPAARAVIGPP 110
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = -3
Query: 610 AXEXPEXGPXPXSPRXPXXXLXRXPXPPPXEPPXXT 503
A P P P+ P L P PPP + P T
Sbjct: 147 ASRAPSPPAPPSPPQDPAPSLPHAPAPPPPQAPAPT 182
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Frame = -3
Query: 667 PPXGXPXXGXXPXKXXXXEAXEXPEX-GPXPXSPRX--PXXXLXRXPXPPPXEPPXXTXS 497
PP P P A P GP P P P + P PPP PP
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
Query: 496 G 494
G
Sbjct: 376 G 376
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -3
Query: 664 PXGXPXXGXXPXKXXXXEAXEXPEXGPXPXSPRXPXXXLXRXPXPPP 524
P P G P P GP P P P P PPP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,491,881
Number of Sequences: 37544
Number of extensions: 121454
Number of successful extensions: 1315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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