Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C01
         (795 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    58   6e-11
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.9  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   8.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.6  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   8.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 58.4 bits (135), Expect = 6e-11
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
 Frame = -3

Query: 571 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXXX 392
           +HG   Q +R  +L  F+     VLVAT VAARGLDI  V  VIN+ LP +++ Y+H   
Sbjct: 439 IHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIG 498

Query: 391 XXXXXXXXXXXVSLAGEG-ERNLVKSIVKRASKPVKSRQIPPDIVAK*Q-GETDQTRTGD 218
                       S   E  +RNL   + K  S+    ++IP  + +K   G  DQ    D
Sbjct: 499 RTGRVGNKGKATSFFDEDQDRNLASDLAKILSQ--AKQEIPEWLGSKSYGGSADQFGGRD 556

Query: 217 CRNSRRG 197
            R    G
Sbjct: 557 IRGDDFG 563


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 336 SPSPASETDTPARPALAVRPTLCI*CSKVAG 428
           SPSP S      + +   RP  C  C++  G
Sbjct: 115 SPSPTSSVSPEVKDSSRDRPFTCEVCNRSFG 145


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 204 DEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQK-REEKERLALT 28
           ++E A +Q+ K EK+ +  ++V +  E  PG + E       +Q   +K   E++ LA  
Sbjct: 5   NDEKALEQIAKSEKEPSLTDLVQRWLERTPGLELEGFNFWGKYQKAVEKLLTEQKELAEK 64

Query: 27  THVEKKKK 4
              E  K+
Sbjct: 65  EEAETLKR 72


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 204 DEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQK-REEKERLALT 28
           ++E A +Q+ K EK+ +  ++V +  E  PG + E       +Q   +K   E++ LA  
Sbjct: 165 NDEKALEQIAKSEKEPSLTDLVQRWLERTPGLELEGFNFWGKYQKAVEKLLTEQKELAEK 224

Query: 27  THVEKKKK 4
              E  K+
Sbjct: 225 EEAETLKR 232


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 204 DEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQK-REEKERLALT 28
           ++E A +Q+ K EK+ +  ++V +  E  PG + E       +Q   +K   E++ LA  
Sbjct: 165 NDEKALEQIAKSEKEPSLTDLVQRWLERTPGLELEGFNFWGKYQKAVEKLLTEQKELAEK 224

Query: 27  THVEKKKK 4
              E  K+
Sbjct: 225 EEAETLKR 232


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 263 DIGRYLSGFDRFGRAFDYRFDQIPL 337
           ++G  L   DRF R F   FD + L
Sbjct: 85  EVGYDLKSPDRFVRQFTICFDDVDL 109


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,390
Number of Sequences: 336
Number of extensions: 2352
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)