Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_B23
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    36   0.007
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    31   0.21 
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    28   2.0  

>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
 Frame = -2

Query: 390 EVYTVLPYKYKKNLKAFYIVHPXXXXXXXXXXXXXXMAPAIKAKVHSLPGVEYLYSVMPR 211
           + Y  + Y   KN+KA Y++H                +P    K   L  +  L   +P 
Sbjct: 78  KAYYGMDYYLHKNVKAVYVIHTDWMSKVAIRTLLSIASPKFTRKFRYLNSISDLNKYIPL 137

Query: 210 DQLEVPAFVTEYDMTIN-GLHYFQPDTTS 127
             L++P  V E+D  +   +    P  TS
Sbjct: 138 SHLKLPPIVYEFDRNVEPAIFPSNPSATS 166


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 94   DEGGTRADTLRTSRVRLEIVETVYRHVVLRDEGRHLELVARHDGVQVLDAGQTVDLG 264
            DE     D     R++ +++   ++H  +      ++ +  +D V VLD+G+TV+ G
Sbjct: 1349 DESTASVDDTTDRRIQ-QMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFG 1404


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 515 PSLCSPMGNHSPXXTTTGRPISXTPLXXKTSNPKXLXS 628
           PS  + MG   P   T+G P+S TP   KTS    L S
Sbjct: 253 PSKQAIMGTRQPN-ATSGSPLSVTPFLQKTSTSIGLSS 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,076
Number of Sequences: 5004
Number of extensions: 38245
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)