Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_B23
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 48 1e-05
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 37 0.024
01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638 36 0.032
02_05_0251 - 27155905-27156127,27156228-27156697 33 0.39
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 30 2.1
03_05_0114 - 20970633-20970726,20971405-20971580 30 2.1
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 29 6.4
03_02_0717 - 10643285-10643584,10643877-10644020,10646241-106463... 29 6.4
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 48.0 bits (109), Expect = 1e-05
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = -2
Query: 399 GF-KEVYTVLPYKYKKNLKAFYIVHPXXXXXXXXXXXXXXMAPAIKAKVHSLPGVEYLYS 223
GF K + +L K+++NL A Y++HP + + KV + + +L+
Sbjct: 499 GFMKRLQQILGRKHQRNLHAIYVLHPTLGLRTAILAMQMFVDGEVWKKVVYVDRLVHLFR 558
Query: 222 VMPRDQLEVPAFVTEYDMTING 157
+PR+QL +P FV ++D+ +NG
Sbjct: 559 YVPREQLTIPDFVFQHDLEVNG 580
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 36.7 bits (81), Expect = 0.024
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = -2
Query: 399 GF-KEVYTVLPYKYKKNLK--------AFYIVHPXXXXXXXXXXXXXXMAPAIKAKVHSL 247
GF K + +L K+++NL A Y++HP + + KV +
Sbjct: 352 GFMKRLQQILGRKHQRNLHVGISYDHTAIYVLHPTLGLRTAILALQLFVDGEVWKKVIYV 411
Query: 246 PGVEYLYSVMPRDQLEVPAFVTEYDMTING 157
+ L+ +PR+QL +P FV ++D+ +NG
Sbjct: 412 DRLVQLFRYVPREQLTIPDFVFQHDLEVNG 441
>01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638
Length = 272
Score = 36.3 bits (80), Expect = 0.032
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 387 VYTVLPYKYKKNLKAFYIVHP-XXXXXXXXXXXXXXMAPAIKAKVHSLPGVEYLYSVMPR 211
VY LP +YK+ L+ Y +HP ++ + K+ + +EYL+ + +
Sbjct: 151 VYEDLPPEYKERLQILYFLHPGLRSRLAIATLGRLFLSGGLYWKIKYVSRLEYLWGDIRK 210
Query: 210 DQLEVPAFVTEYD 172
++E+P FV ++D
Sbjct: 211 GEVEIPDFVIDHD 223
>02_05_0251 - 27155905-27156127,27156228-27156697
Length = 230
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -2
Query: 393 KEVYTVLPYKYKKNLKAFYIVHPXXXXXXXXXXXXXXM-APAIKAKVHSLPGVEYLYSVM 217
+ Y LP K+ L+A Y VHP + + + K+ + +EYL+ +
Sbjct: 116 RAAYEALPAAAKERLRAVYFVHPGFQARLFFATLGRFLFSSGLYEKLRYMSRLEYLWEHV 175
Query: 216 PRDQLEVPAFVTEYD 172
+ ++EVP +D
Sbjct: 176 SKGEMEVPECARRHD 190
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = +1
Query: 472 IGSRXLDQVTGSAFSKSMFPXGEPFPDXXXHGPTHFNXPPPXKNFESQXPXLXVFXTLAR 651
+G + L V SA S + P P P P HF PPP S P L AR
Sbjct: 6 VGEKLLSSVR-SARSLGLLPPTPPPPASRPEVPNHFLPPPPSSISHSVYPVLDPIEVPAR 64
>03_05_0114 - 20970633-20970726,20971405-20971580
Length = 89
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 212 RGMTEYRYSTPGRL---WTLAFIAGAMNVVNHHVIILVQNV 325
RG + +S P RL WT AF GA V+HH L N+
Sbjct: 13 RGDSGVPHSDPQRLVTTWTGAFALGAAACVHHHASALASNI 53
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 247 ARRRVPVLRHAARPARGAGLRHGVRHDDKRSPLFPAGHD*Y 125
A +P+L AA AG GV +R P FPA H Y
Sbjct: 374 APSHLPLLHAAASSGFSAGAGAGVAAATRRQPPFPADHPFY 414
>03_02_0717 -
10643285-10643584,10643877-10644020,10646241-10646321,
10646506-10646589
Length = 202
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 152 WRPFIVMSYSVTKAGTSSWSRGMTEYRYSTPGRLWTLAFIAGAMNVVNH 298
W + + + K + G+T +Y+ P R + +AF+ N +NH
Sbjct: 52 WGHMVRVYQLLLKGRDALMKLGITGKKYTQPARCYMIAFVLVYTNTINH 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,072,490
Number of Sequences: 37544
Number of extensions: 349316
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -