Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_B23
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical p...    38   0.009
AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical...    30   2.5  
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr...    28   10.0 
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec...    28   10.0 

>Z66521-13|CAA91403.1|  444|Caenorhabditis elegans Hypothetical
           protein W02B12.8a protein.
          Length = 444

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 390 EVYTVLPYKYKKNLKAFYIVHPXXXXXXXXXXXXXXMAPAIKAKVHSLPGVEYLYSVMPR 211
           + Y  L  ++KKNLKA Y+VHP              ++   + K H +  ++ L + +  
Sbjct: 152 QAYKQLDRRFKKNLKALYVVHPTRFIRIIFSLFKGFISSKFENKFHYVMCIDELENALSV 211

Query: 210 DQLEVPAFVTEYDMTIN 160
            +L +P+ + ++D + +
Sbjct: 212 ARLNLPSPIRDHDKSFS 228


>AL132862-34|CAB60536.2|  395|Caenorhabditis elegans Hypothetical
           protein Y73F8A.11 protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 136 VRLEIVETVYRHVVLRDEGRHLELVARHDGVQVLDAGQTVDLGFY 270
           +   +V+ VYR+++  D+ +  E  A H  V+++    T  LGF+
Sbjct: 41  IAFAVVQMVYRYLMTEDQQKFFEYSAIHLNVRLIHIPLTFMLGFF 85


>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
           protein C29E6.2 protein.
          Length = 1193

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 VETVYRHVVLRDEGRHLELVARHDGVQVLDA 243
           + TV+  V LR E  +LE++  HD V+ + A
Sbjct: 222 LNTVFHIVALRGEPEYLEMMMDHDPVEAIKA 252


>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
           receptor potential subfamilyA-1 protein.
          Length = 1206

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 VETVYRHVVLRDEGRHLELVARHDGVQVLDA 243
           + TV+  V LR E  +LE++  HD V+ + A
Sbjct: 240 LNTVFHIVALRGEPEYLEMMMDHDPVEAIKA 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,835
Number of Sequences: 27780
Number of extensions: 244292
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)