Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_B22
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 192 6e-50
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 190 3e-49
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.1
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 7.1
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 192 bits (467), Expect = 6e-50
Identities = 93/140 (66%), Positives = 106/140 (75%)
Frame = -1
Query: 746 ISSRPFGQRAVXKFAAHTGGTXIAGRFTPGAFTNQIPSCIP*PRLLIVLDPAQDHQPITE 567
ISSRP+G RAV KFAAHTG T IAGRFTPG FTN I PRL+IV DP D Q I E
Sbjct: 80 ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKE 139
Query: 566 ASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 387
AS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W+
Sbjct: 140 ASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWE 199
Query: 386 VVVDLFFYRDPEESEKDEQQ 327
V+ DL+FYRDPEE E++E+Q
Sbjct: 200 VMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 190 bits (462), Expect = 3e-49
Identities = 91/142 (64%), Positives = 106/142 (74%)
Frame = -1
Query: 746 ISSRPFGQRAVXKFAAHTGGTXIAGRFTPGAFTNQIPSCIP*PRLLIVLDPAQDHQPITE 567
+S+R +G RAV KFAAHTG T IAGRFTPG FTN I PRL++V DP D Q I E
Sbjct: 79 VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKE 138
Query: 566 ASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 387
AS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R WD
Sbjct: 139 ASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWD 198
Query: 386 VVVDLFFYRDPEESEKDEQQAK 321
V+ DL+FYRDPEE E++E+ K
Sbjct: 199 VMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = -1
Query: 650 TNQIPSCIP*PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSS 471
T++ PS + P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 171 TDKKPSYVF-PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSL 229
Query: 470 HSIGLMWWLLAR 435
L+ LL+R
Sbjct: 230 RCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 637 QAAFRDLVS*LYWTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTLL 461
+A FR + + +L+K + PLL + F LL + +TP DL+T L P +LL
Sbjct: 722 RALFRGIGGGRFESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLL 781
Query: 460 V 458
+
Sbjct: 782 L 782
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 773 IGXPR*XVGISSRPFGQRAVXKF-AAHTGGTXI-AGRFTPGAFTNQIPS 633
IG P+ +G S R F A + HT G + +G TP A+ N PS
Sbjct: 210 IGGPQEDMGYS-RNFPVHASSNYNTTHTSGGGVHSGAATPNAYVNNNPS 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,173
Number of Sequences: 5004
Number of extensions: 58396
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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