Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_B19
         (1396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p pro...    30   6.6  
AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisom...    30   6.6  
AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-P...    30   6.6  

>BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p protein.
          Length = 1250

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +3

Query: 876  GLGGXXPGXXAGXXGPXXGKGGXXXXKKGXGTXGXDGXKAXXXGKPKWGXG 1028
            G GG  PG   G  G   G GG      G G+ G  G      G    G G
Sbjct: 771  GGGGPGPGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGGSG 821


>AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisomerase
            III alpha protein.
          Length = 1250

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +3

Query: 876  GLGGXXPGXXAGXXGPXXGKGGXXXXKKGXGTXGXDGXKAXXXGKPKWGXG 1028
            G GG  PG   G  G   G GG      G G+ G  G      G    G G
Sbjct: 771  GGGGPGPGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGGSG 821


>AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-PA
            protein.
          Length = 1250

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +3

Query: 876  GLGGXXPGXXAGXXGPXXGKGGXXXXKKGXGTXGXDGXKAXXXGKPKWGXG 1028
            G GG  PG   G  G   G GG      G G+ G  G      G    G G
Sbjct: 771  GGGGPGPGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGGSG 821


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,446,761
Number of Sequences: 53049
Number of extensions: 272727
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 24,988,368
effective HSP length: 88
effective length of database: 20,320,056
effective search space used: 7640341056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)