Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_B18
(1019 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.016
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.46
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.60
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.4
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +2
Query: 671 KXXXPPPPRVFFXXXPPPXGGXXXTPPPLPHXXXAXXPPPPP 796
K PPPP V P P PPP P PPPPP
Sbjct: 730 KSPPPPPPAVIV---PTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 33.1 bits (72), Expect = 0.065
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 915 PPPPPXXPXXXCFSPPPXXLXXXXPPPPPP 1004
PPPPP P PPP PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPP-------PPPPPP 783
Score = 32.7 bits (71), Expect = 0.085
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 686 PPPRVFFXXXPPPXGGXXXTPPPLPHXXXAXXPPPPP 796
P P P P G PPP P A PPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.5 bits (68), Expect = 0.20
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 915 PPPPPXXPXXXCFSPPPXXLXXXXPPPPPP 1004
PPP P PPP PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Frame = +3
Query: 915 PPPPPXX------PXXXCFSPPPXXLXXXXPPPPPP 1004
PPPPP P PP + PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +3
Query: 918 PPPPXXP--XXXCFSPPPXXLXXXXPPPPPP 1004
P PP P PPP + PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Frame = +3
Query: 915 PPPPPXXPXXXCFS--------PPPXXLXXXXPPPPPP 1004
PPPPP P + PPP + PPPPPP
Sbjct: 732 PPPPP--PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 955 PPPPQXXXXXXPXPPPP 1005
PPPP P PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 955 PPPPQXXXXXXPXPPPP 1005
PPPP P PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.46
Identities = 28/109 (25%), Positives = 31/109 (28%), Gaps = 3/109 (2%)
Frame = +2
Query: 683 PPPPRV-FFXXXPPPXGGXXXTPPPLPHXXXAXXPPPPPXYKXXXXXVGXXXXXXXFXWX 859
PPPPR P P G PPP P + PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 860 XPXPLPEKXXSXFCXXXXPPPXTXXPTXXLFLPP--PXKXXXXXPPXPP 1000
P P S P P + P+ LPP P P PP
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 29.9 bits (64), Expect = 0.60
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 915 PPPPPXXPXXXCFSPPPXXLXXXXPPPPPP 1004
PPPPP S P PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Frame = +3
Query: 915 PPPPPXXPXXXCFSPPP--XXLXXXXPPPPPP 1004
PPPPP PPP PP PPP
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.60
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 915 PPPPPXXPXXXCFSPPPXXLXXXXPPPPPP 1004
PPPPP P F PP PPPPPP
Sbjct: 9 PPPPPPPPG---FEPP-----SQPPPPPPP 30
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 719 PPXGGXXXTPPPLPHXXXAXXPPPPPXY 802
PP PPP PPPPP Y
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGY 32
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 955 PPPPQXXXXXXPXPPPP 1005
PPPP P PPPP
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +3
Query: 864 PXLXQKXXXPXFVXXXXPPPPPXXPXXXCFSPPPXXLXXXXPPPPPP 1004
P + + P + PPPPP +PP PPPP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 689 PPRVFFXXXPPPXGGXXXTP--PPLPHXXXAXXPPPPP 796
PP++ PPP P PP+P + PPP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 683 PPPPRVFFXXXPPPXGGXXXTPPPLPHXXXAXXPPP 790
PPPP P P G PPPLP P P
Sbjct: 1715 PPPPSA----PPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.7 bits (61), Expect = 1.4
Identities = 21/91 (23%), Positives = 27/91 (29%)
Frame = +2
Query: 731 GXXXTPPPLPHXXXAXXPPPPPXYKXXXXXVGXXXXXXXFXWXXPXPLPEKXXSXFCXXX 910
G PPP+ H PPPP ++ P P+ +
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM---- 259
Query: 911 XPPPXTXXPTXXLFLPPPXKXXXXXPPXPPP 1003
PPP P +PPP PPP
Sbjct: 260 PPPPMHHEPGE--HMPPPPMHHEPGEHMPPP 288
Score = 27.9 bits (59), Expect = 2.4
Identities = 26/102 (25%), Positives = 32/102 (31%), Gaps = 6/102 (5%)
Frame = +2
Query: 683 PPPPRVFFXXX---PPPXG---GXXXTPPPLPHXXXAXXPPPPPXYKXXXXXVGXXXXXX 844
PPPP PPP G PPP+ H PPPP ++
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 306
Query: 845 XFXWXXPXPLPEKXXSXFCXXXXPPPXTXXPTXXLFLPPPXK 970
P P+ + PPP P + PPP K
Sbjct: 307 PGEHMPPPPMHHEPGEHM----PPPPMHHEPGEHM-PPPPFK 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.2
Identities = 28/106 (26%), Positives = 30/106 (28%)
Frame = +2
Query: 686 PPPRVFFXXXPPPXGGXXXTPPPLPHXXXAXXPPPPPXYKXXXXXVGXXXXXXXFXWXXP 865
P P V P P G PP+P A P P P G P
Sbjct: 1105 PKPSVAVPPVPAPSGA-----PPVPKPSVAAPPVPVPS--------GAPPVPKPSVAAPP 1151
Query: 866 XPLPEKXXSXFCXXXXPPPXTXXPTXXLFLPPPXKXXXXXPPXPPP 1003
P P PP P +PP K PP PPP
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPV---PAPSSGIPPVPKPAAGVPPVPPP 1194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,472
Number of Sequences: 5004
Number of extensions: 34606
Number of successful extensions: 307
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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