Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_B10
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 32 0.45
AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical ... 32 0.59
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.78
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 0.78
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 1.8
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 29 3.1
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 29 3.1
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 3.1
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 3.1
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 5.5
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 9.6
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 9.6
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 28 9.6
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 32.3 bits (70), Expect = 0.45
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G G GGG GG + S G G GPG GG GGG
Sbjct: 201 GGGGYGGGGMGGGGYGGGGDGGYGPSGGYGGGYGPGGGYGMGGGGGGGG 249
>AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical
protein Y59A8B.10 protein.
Length = 413
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GP GG GGG GG+S + P G G G GGG
Sbjct: 235 GPSGGGGGGGGGGQSNN--NSSFSSVPAFNGGGGGGGGMNVGAAGFGGG 281
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 696 GGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GG GGG GG + R PG G G G GG GGG
Sbjct: 184 GGGGGGGWGGPAQRG-------GPGAYGGPGGGGQGGYGGGNYGGG 222
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 696 GGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GG GGG GG + R PG G G G GG GGG
Sbjct: 222 GGGGGGGWGGPAQRG-------GPGAYGGPGGGGQGGYGGGNYGGG 260
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGGXA 553
G GG GGG GG + G G G GG GG A
Sbjct: 792 GGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGA 842
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GP G GGG GG +G G GG GGG
Sbjct: 781 GPTGSSGGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGG 829
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG GGG GG G G G GG GGG
Sbjct: 784 GSSGGGGGGGNGGSGGGGG--GGGGGSGGSGGGGSNSNSGGGGGNGGGG 830
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -1
Query: 696 GGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GG GGG G S + G G G G GG G G
Sbjct: 800 GGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDG 845
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG GGG GG S S G G G G GG GGG
Sbjct: 130 GCGGGGGGGCGGGSSG----GCGGGSSGGCGGGGGGGCGGGGGGGCGGG 174
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG GGG GG S S G G G G GG GGG
Sbjct: 130 GCGGGGGGGCGGGSSG----GCGGGSSGGCGGGGGGGCGGGGGGGCGGG 174
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -1
Query: 696 GGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GG GGG GG R G G G GG GGG
Sbjct: 87 GGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGG 132
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -1
Query: 696 GGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GG G G GG + G G G G GG GGG
Sbjct: 58 GGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGG 103
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GP G GGG G R N G G G G G GGG
Sbjct: 52 GPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGG 100
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG G GG + N G G G G GG GGG
Sbjct: 66 GGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGG 114
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = -1
Query: 699 EGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXG 565
EGG G G G+ N S G G+G G GT G
Sbjct: 602 EGGDGNGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGEGNKSGTPG 646
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = -1
Query: 699 EGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXG 565
EGG G G G+ N S G G+G G GT G
Sbjct: 602 EGGDGNGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGEGNKSGTPG 646
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 687 GGGXXGGESXRXXERXXNXSPGXXA-GAGPGXXXXXXGGTXGGG 559
GGG GG+ R +R + + G G G GG+ GGG
Sbjct: 280 GGGGYGGDRDRGGDRGGDRGGSRYSTGGGSGGGYRSGGGSSGGG 323
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGG 562
G GG GGG GG+ G G G G GG GG
Sbjct: 131 GGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGG 178
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG GGG GG + G G G GG GGG
Sbjct: 127 GNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGG 175
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG GGG GG R N G G G G GG GGG
Sbjct: 86 GDWGGNGGGGRGG-GGRGDWGGNNNGGGGNWGGG-GNNDGGWGGNNGGG 132
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -1
Query: 699 EGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
+GG GG GG R G G G GG GGG
Sbjct: 122 DGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGG 168
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG GGG G + G G G GG GGG
Sbjct: 68 GGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGGNQGGG 116
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = -1
Query: 696 GGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGGXAXXXXXXPXXXPX 517
GG GGG GG G G G G GG GGG P P
Sbjct: 66 GGGGGGCGGGGG--------GCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPA 117
Query: 516 XXGXRG 499
G G
Sbjct: 118 CGGGCG 123
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 696 GGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGG 562
GG GGG GG G G G G GG GG
Sbjct: 9 GGGGGGFRGGRGGDRGGSRGGFGGGGRGGYGGGDRGSFGGGDRGG 53
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
GP+G G G GG+ + PG GAG GG+ G G
Sbjct: 277 GPDGQPGHGG-GGQPGPQGPPGDDGHPGEDGGAGGPGQPGQDGGSGGSG 324
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGGXA 553
G G GGG GG G G G G GG GGG A
Sbjct: 86 GGGGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGGGGGYA 136
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGA-GPGXXXXXXGGTXGGGXA 553
G GG GGG G R AGA G G GG GG A
Sbjct: 51 GTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSA 102
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = -1
Query: 705 GPEGGXGGGXXGGESXRXXERXXNXSPGXXAGAGPGXXXXXXGGTXGGG 559
G GG GGG GG + + G PG G GGG
Sbjct: 836 GGGGGGGGGGGGGSYHQPYNQDQRRGGRGGGGGPPGYQRPPYRGGGGGG 884
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,744
Number of Sequences: 27780
Number of extensions: 121803
Number of successful extensions: 942
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -