Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_B09
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0894 + 7047273-7048277,7049124-7049549                           35   0.087
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   7.5  
01_01_0094 - 730484-731570,732030-732715                               28   7.5  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   9.9  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   9.9  
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552...    28   9.9  
03_05_0543 - 25404630-25405408,25405461-25405605                       28   9.9  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   9.9  

>01_01_0894 + 7047273-7048277,7049124-7049549
          Length = 476

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +3

Query: 246 GFRLPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPA 413
           G+RLP PPS    R  PF+  H   LG+L  R +   A    PV+L   G + TV+ S A
Sbjct: 43  GWRLPLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSA 98

Query: 414 SSFE*AGVLTHLKFENRLR 470
           +S + A       F +R R
Sbjct: 99  ASAQEAMRARDAAFASRAR 117


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 370 LPKLAHLAPSSDLRLHRSSKPEFSPI 447
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 240 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 335
           + G +LP  P  C + P P +V   RF   LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 631 KSIVGTGYRGERLIEPSSSWFRPKFPSG 548
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 204 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 287
           G+LLR  +   LLS  RL   P PP CCH R
Sbjct: 63  GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>05_02_0003 +
           5520331-5520476,5520572-5520644,5520762-5520928,
           5520929-5521223,5521531-5521674,5521756-5521890,
           5522004-5522093,5523702-5523809,5523905-5523986,
           5525362-5525417,5525888-5525986,5526090-5526394,
           5526898-5527075,5527167-5527280,5527376-5527507,
           5527614-5527718
          Length = 742

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 367 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 203
           +TG  G  KR +KA +K S+D +    R  QQ G + + +   ++Q+   +S  P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 27  PPRSAPTEAPSGLTP---RPFCALRRARP 104
           PPR AP  AP+ LTP   + F A RR  P
Sbjct: 155 PPRRAPAPAPAPLTPALSQRFLAERRPAP 183


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 450 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 611
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,226,859
Number of Sequences: 37544
Number of extensions: 537977
Number of successful extensions: 1269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)