Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_B02
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 163 1e-40
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 163 1e-40
11_04_0146 - 14091671-14092357,14092996-14093229 31 1.4
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329 29 5.5
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.2
06_01_0911 - 7031099-7031779,7031896-7032221,7032306-7032318,703... 28 7.2
04_01_0592 + 7808821-7809210 28 7.2
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 28 7.2
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 163 bits (397), Expect = 1e-40
Identities = 74/116 (63%), Positives = 90/116 (77%)
Frame = -3
Query: 628 RAKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 449
+ KGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 448 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 281
+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 285 VYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 86.2 bits (204), Expect = 3e-17
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = -1
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 142
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = -2
Query: 746 ISGGTIEDKVKWPREHXENLSLSILCXPQDEMIDCIGVTKGQ 621
I+GGTI DKV + + E +DEMID IGVTKG+
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 163 bits (397), Expect = 1e-40
Identities = 74/116 (63%), Positives = 90/116 (77%)
Frame = -3
Query: 628 RAKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 449
+ KGY+GV +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK
Sbjct: 225 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Query: 448 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 281
+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 285 VYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
Score = 93.5 bits (222), Expect = 2e-19
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = -1
Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = -2
Query: 746 ISGGTIEDKVKWPREHXENLSLSILCXPQDEMIDCIGVTKGQ 621
I+GGTI DKV + + E +DEMID IGVTKG+
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 625 AKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAW 527
AK YK T RWH K++ K + KV +W
Sbjct: 265 AKIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297
>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
Length = 264
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 625 AKGYKGVTSRWHTKKLPRKTHQGLRKV 545
AK YK T RWH K++ K + KV
Sbjct: 28 AKIYKDKTKRWHDKRIKHKEFKAREKV 54
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -3
Query: 520 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 371
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 370 SEKSITPMGGFPHYGEVNN 314
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>06_01_0911 -
7031099-7031779,7031896-7032221,7032306-7032318,
7032402-7032414,7032498-7032510,7032592-7032790
Length = 414
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 654 ND*LHWCHQGPKDTKVSLLV 595
ND LHWC GP DT +L+
Sbjct: 389 NDCLHWCAPGPVDTFNDILM 408
>04_01_0592 + 7808821-7809210
Length = 129
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 634 SPRAKGYKGVTSRWHTKKLPRKTHQGLRKV 545
S AK YK T RWH K++ K + L KV
Sbjct: 25 SHNAKIYKERTKRWHDKRIKIKKFKPLDKV 54
>01_06_1783 + 39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 663 PR*ND*LHWCHQGPKDTKVSLLVGTQR 583
P D LHWC GP DT +L+ T R
Sbjct: 1012 PPPQDCLHWCMPGPVDTWNEMLLETIR 1038
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,369,089
Number of Sequences: 37544
Number of extensions: 462187
Number of successful extensions: 1189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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