Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_B02
         (780 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   229   4e-60
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   229   4e-60
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   229   4e-60
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   229   4e-60
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   229   4e-60
AE014297-3974|AAF56606.1|  307|Drosophila melanogaster CG5471-PA...    29   7.2  

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  229 bits (559), Expect = 4e-60
 Identities = 102/119 (85%), Positives = 110/119 (92%)
 Frame = -3

Query: 628 RAKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 449
           + KG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKK
Sbjct: 235 KGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKK 294

Query: 448 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 272
           IYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 295 IYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 353



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -1

Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 345 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 404

Query: 117 KDRIREE 97
           KDR++EE
Sbjct: 405 KDRLKEE 411



 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 746 ISGGTIEDKVKWPREHXENLSLSILCXPQDEMIDCIGVTKGQ 621
           ++GG+IEDKVKW REH E          QDEMIDC+GVTKG+
Sbjct: 196 LNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGK 237


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  229 bits (559), Expect = 4e-60
 Identities = 102/119 (85%), Positives = 110/119 (92%)
 Frame = -3

Query: 628 RAKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 449
           + KG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKK
Sbjct: 224 KGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKK 283

Query: 448 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 272
           IYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 284 IYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 342



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -1

Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 334 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393

Query: 117 KDRIREE 97
           KDR++EE
Sbjct: 394 KDRLKEE 400



 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 746 ISGGTIEDKVKWPREHXENLSLSILCXPQDEMIDCIGVTKGQ 621
           ++GG+IEDKVKW REH E          QDEMIDC+GVTKG+
Sbjct: 185 LNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGK 226


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  229 bits (559), Expect = 4e-60
 Identities = 102/119 (85%), Positives = 110/119 (92%)
 Frame = -3

Query: 628 RAKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 449
           + KG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKK
Sbjct: 211 KGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKK 270

Query: 448 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 272
           IYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 271 IYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 329



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -1

Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 321 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 380

Query: 117 KDRIREE 97
           KDR++EE
Sbjct: 381 KDRLKEE 387



 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 746 ISGGTIEDKVKWPREHXENLSLSILCXPQDEMIDCIGVTKGQ 621
           ++GG+IEDKVKW REH E          QDEMIDC+GVTKG+
Sbjct: 172 LNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGK 213


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  229 bits (559), Expect = 4e-60
 Identities = 102/119 (85%), Positives = 110/119 (92%)
 Frame = -3

Query: 628 RAKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 449
           + KG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKK
Sbjct: 211 KGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKK 270

Query: 448 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 272
           IYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 271 IYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 329



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -1

Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 321 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 380

Query: 117 KDRIREE 97
           KDR++EE
Sbjct: 381 KDRLKEE 387



 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 746 ISGGTIEDKVKWPREHXENLSLSILCXPQDEMIDCIGVTKGQ 621
           ++GG+IEDKVKW REH E          QDEMIDC+GVTKG+
Sbjct: 172 LNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGK 213


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  229 bits (559), Expect = 4e-60
 Identities = 102/119 (85%), Positives = 110/119 (92%)
 Frame = -3

Query: 628 RAKGYKGVTSRWHTKKLPRKTHQGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKK 449
           + KG+KGVTSRWHTKKLPRKTH+GLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKK
Sbjct: 224 KGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKK 283

Query: 448 IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 272
           IYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVM +G   G+ K
Sbjct: 284 IYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKK 342



 Score =  119 bits (287), Expect = 4e-27
 Identities = 55/67 (82%), Positives = 60/67 (89%)
 Frame = -1

Query: 297 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 118
           KGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LK
Sbjct: 334 KGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393

Query: 117 KDRIREE 97
           KDR++EE
Sbjct: 394 KDRLKEE 400



 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -2

Query: 746 ISGGTIEDKVKWPREHXENLSLSILCXPQDEMIDCIGVTKGQ 621
           ++GG+IEDKVKW REH E          QDEMIDC+GVTKG+
Sbjct: 185 LNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGK 226


>AE014297-3974|AAF56606.1|  307|Drosophila melanogaster CG5471-PA
           protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +3

Query: 483 F*PARATVNDTLEGCQAPMQATFLRPWCVLRGSFFVCQREVTPLYPLALGD--TNAVN 650
           F P  +++ D LEG Q+     +  P   L   FF    +    Y  A  D   NAVN
Sbjct: 91  FGPGPSSIADALEGSQSAAAPNYAAPQAQLEKEFFTYTADEGDFYDPAASDRVANAVN 148


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,982,053
Number of Sequences: 53049
Number of extensions: 763278
Number of successful extensions: 1993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1988
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)