Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P23
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 33 0.050
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 30 0.36
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 29 1.1
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 1.4
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 28 1.9
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 28 1.9
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 3.3
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 4.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 4.4
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 26 5.8
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 7.6
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 7.6
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 33.1 bits (72), Expect = 0.050
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +1
Query: 364 SQGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGG 543
S+ R+ ++ +D L LW+ + +EL + K+ + +C S + G + G
Sbjct: 71 SKDYSRMATVSEDKCLRLWDSTQPDKIELLYQ--KNIPKRCADLCFAGS-NEIVFGDKFG 127
Query: 544 NIYSLDLSAFTISE 585
++Y +D + FT SE
Sbjct: 128 DVYCVDENWFTTSE 141
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.36
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 409 LHLWEINEKSLVELKSHVFEGKNKKISAICVE-SSAKNALLGTEGGNIYSLDLSAFTISE 585
LH WE++ V +H+ G + + I E NALL + G +Y L+ F +
Sbjct: 37 LHEWEVDVVPTVHFSNHLGYGATRGSACIPEEVHDLLNALL-QDNGIVYDAILTGFVPNH 95
Query: 586 DVIYQDVVMQNCPEDYK 636
D+I V+ +C YK
Sbjct: 96 DIIQ---VIFDCVLAYK 109
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +1
Query: 382 LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNIYSLD 561
+++ DD S+H W++ K+ V L+S F+ ++ +I ++C K L+ T + S
Sbjct: 238 MVTGSDDGSVHCWDV--KTGVSLQS--FQFRSSQILSLCFRPKYKMLLVDTFNYELNSYQ 293
Query: 562 L 564
L
Sbjct: 294 L 294
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 400 DNSLHLWEINEKSLVELKSHVFEGKNKKISAICV 501
DN++ LW +N + V HVF G ++A+ +
Sbjct: 385 DNTVRLWNLNIEDNVYKCIHVFTGHTASVTAVAL 418
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 367 QGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGT 534
Q T L S DD+ + LW++N + VFEG + I + E + L G+
Sbjct: 157 QNTWVLASGADDSRVRLWDLNSSRSMA----VFEGHSSVIRGLTFEPTGSFLLSGS 208
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 716 WPCSGTEXLRLPTHTFVSNXQLESLCWNDDGEPFTXSXND 835
W S ++ + + T T + Q+ L WN DG F ND
Sbjct: 304 WSESTSKAVLVATITNAHDEQVCGLTWNHDGSQFASGGND 343
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 400 DNSLHLWEI-NEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTE 537
D S HL E+ E VEL++ +EG + + +IC S K GT+
Sbjct: 8 DASSHLNEVLTELESVELENVEYEGPSLQNVSICASPSEKKRKWGTQ 54
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 382 LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNI 549
LI+ DDN + +W+ K+ V + EG +S S + G+E G +
Sbjct: 201 LITAGDDNLIKVWDYQTKACV----RILEGHTNNVSFAFFHSKFPIIISGSEDGTV 252
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 382 LISLCDDNSLHLWEINEKSLVELKSHVFEG-KNKKISAICVESSAKNALLGTEGGNIYSL 558
+ ++ +D +L LW N+K+L ++ + G + K I ++ V S+ G G++ S
Sbjct: 251 IATVSEDLTLRLWTWNDKTLT--NTYTYTGHRGKHIWSLVVSSANPIIYTGGNDGSVRSW 308
Query: 559 D 561
D
Sbjct: 309 D 309
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 705 VSDQNTCRSLRVFVYRLHRAWVYFVILWAVLHNDILVYD-IFRDRESAQI 559
+S Q+T S+R + H + +LW V+ I VYD + ESA +
Sbjct: 581 LSIQSTPHSIRTIPHATHAMVLDNRLLWVVVGKSIYVYDPSTSENESASV 630
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 467 KVKIKRYRPYASSRQRRTLYWEPKAAT 547
K+ R RPY + + WEP AAT
Sbjct: 13 KISRSRNRPYFFNTETHESLWEPPAAT 39
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 749 GAAASRSQSTASPR-LYPIRIRVGVLGCSY 663
G AS Q T LY I I +GV GCSY
Sbjct: 129 GKGASSFQHTVDHFCLYFIYIAIGVFGCSY 158
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 262 LVPPPEHSRYTADQASNSTANTPITNR*SHRYISSQGTGRLISLCDDNSLHLW 420
LV P++ T S+STANT I S+ + + + L++ NSL W
Sbjct: 295 LVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQNYEKAYSLLAAGVTNSLLEW 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,501,118
Number of Sequences: 5004
Number of extensions: 74172
Number of successful extensions: 235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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