Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P23
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 38 0.010
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 33 0.37
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 32 0.49
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 31 0.86
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 31 1.5
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 30 2.6
07_01_1054 + 9250298-9250428,9250889-9251489 30 2.6
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 30 2.6
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 29 3.5
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247... 29 4.6
12_02_1177 - 26708215-26708309,26708355-26708392,26708476-267095... 29 6.1
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 29 6.1
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388... 28 8.1
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 37.9 bits (84), Expect = 0.010
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Frame = +1
Query: 367 QGTGRLISLCDDNSLHLWEINEKSLVELKSHVFEGK-NKKISAICVESSAKNALLGTEGG 543
Q G LI++ ++N + +W + E + + K + I+A V LG E G
Sbjct: 85 QNQGFLIAISNENEIQVWNL------EFRQLFYSSKWDINITAFAVVEGTFLMYLGDENG 138
Query: 544 NIYSLDLSAFTISEDVIYQDVVMQNCPEDYKVN---PGAVESVYEHPKT-PTRILIGYNR 711
+ L + +V + + E V+ P ++ + P T TR+LI Y +
Sbjct: 139 LLSVLKYDVDDGKLQKMPYNVPIHSLAEAACVSLEDPQSIVGILPQPDTFGTRVLIAYEK 198
Query: 712 GLAVLWD 732
GL VLWD
Sbjct: 199 GLLVLWD 205
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 382 LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNI 549
LI+ DD++ +W+ KS V+ EG ISA+C + G+E G +
Sbjct: 197 LITGSDDSTAKVWDYQTKSCVQ----TLEGHTHNISAVCFHPELPIIITGSEDGTV 248
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 32.3 bits (70), Expect = 0.49
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 382 LISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNI 549
LI+ DD + +W+ KS V+ EG +SA+C L G+E G +
Sbjct: 215 LITGSDDQTAKVWDYQTKSCVQ----TLEGHAHNVSAVCFHPELPITLTGSEDGTV 266
>09_02_0152 +
5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 31.5 bits (68), Expect = 0.86
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = +1
Query: 382 LISLCDDNSLHLWEINEKS--LVELKSHVFEGKNKKISAICVESSAKNALLGTEG--GNI 549
L++ DD S+HLW+ ++ + LK H + IS +C+ S + + ++ T G +
Sbjct: 192 LVTAGDDGSVHLWDTTARTPKVSWLKQH-----SAPISGVCI-SPSSDKIIATVGLDKKL 245
Query: 550 YSLDLSAFTISEDVIYQDVVMQNCPEDYKVNPGAVESVYEHPK-TPTRILIGYNRGLAV 723
Y+LD + + + ++ D N G V K P IL YN AV
Sbjct: 246 YTLDSGSRRPTHTIPHEAPFSSLAYNDDGTNSGRVVFYDVRGKPQPLTILRAYNSSEAV 304
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 300 PGVELYGQHTNYESI----VTQIHFITGXRPFDITMRR*QPSLV 419
P V++ GQ+T + V + +TG RPFD T R + SLV
Sbjct: 586 PEVDMTGQYTLKSDVYSFGVVMLELLTGRRPFDSTRPRSEQSLV 629
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +3
Query: 291 YGRPGVELYGQHTNYESI----VTQIHFITGXRPFDITMRR*QPSLV 419
Y P V++ GQ+T + V + +TG +PFD R + SLV
Sbjct: 560 YSAPEVDMTGQYTLKSDVYSFGVVMLELLTGRKPFDSARLRTEQSLV 606
>07_01_1054 + 9250298-9250428,9250889-9251489
Length = 243
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1
Query: 302 WSAVYLECSGGGTKRRESE 246
W+++YLE SGGG +RR S+
Sbjct: 186 WTSLYLEPSGGGDRRRGSD 204
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 385 ISLCDDNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESSAKNALLGTEGGNIYSLDL 564
IS C D + +W++ +V+ + + I+A+C K A++GT GN D
Sbjct: 433 ISGCIDGLVRIWDVRRCQVVD-----WADTKEIITAVCYRPDGKAAVVGTITGNCRHYDA 487
Query: 565 S 567
S
Sbjct: 488 S 488
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 400 DNSLHLWEINEKSLVELKSHVFEGKNKKISAICVESS 510
DNS H W NEK L E+ H +G K S E S
Sbjct: 513 DNSAHCWMFNEKHLEEIPLHT-DGPELKESVDLTEVS 548
>05_01_0316 +
2476689-2477030,2477164-2477283,2477742-2477819,
2477956-2478132,2478317-2478394,2478694-2478866,
2478994-2479149,2479573-2479633,2479831-2480049
Length = 467
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 355 YISSQGTGR-LISLCDDNSLHLWEINEKS 438
+I S+G GR IS C D ++ LW++ + S
Sbjct: 290 FIDSRGDGRYFISNCKDQTIKLWDVRKMS 318
>12_02_1177 -
26708215-26708309,26708355-26708392,26708476-26709563,
26709826-26709945,26710018-26710098,26710696-26710812,
26711122-26711904
Length = 773
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 120 IRGKGQQPSAERQKLQNELFAFRKTVQHGFPH 215
I G+G A+R N FA + + HGFPH
Sbjct: 225 ISGEGSAAGADRGGRINRPFAGMRFILHGFPH 256
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 291 YGRPGVELYGQHTNYESI----VTQIHFITGXRPFDITMRR*QPSLVG 422
Y P V + GQ++ + V + +TG +PFD + R + SLVG
Sbjct: 560 YRAPEVTMSGQYSVKSDVYSFGVVMLELLTGRKPFDRSRPRSEQSLVG 607
>02_04_0624 +
24538095-24538183,24538429-24538612,24538725-24538886,
24538988-24539225,24539301-24539370,24539439-24539530,
24539799-24539836,24540018-24540039,24540462-24540618,
24540702-24540753,24542144-24542207,24542279-24542362,
24543418-24543543,24543622-24543818,24543903-24544091,
24544186-24544434,24544507-24544556,24544977-24545059,
24545164-24545449,24545751-24545794,24545878-24546626
Length = 1074
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 523 LLGT-EGGNIYSLDLSAFTISEDVIYQDV--VMQNCPEDYKVNPGAVESVYEHPKTPTR 690
+LGT E N+ SL+ +FT+ + Y+DV V+ + P + + ++++H + +R
Sbjct: 799 ILGTREYNNLASLEAPSFTLLHEEDYEDVPDVLASEPVEAECKSATNNTIFDHIRKKSR 857
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,736,078
Number of Sequences: 37544
Number of extensions: 519620
Number of successful extensions: 1567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -