Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P22
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 140 2e-34
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.087
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 29 1.1
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 29 1.1
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 28 1.4
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 28 1.4
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.5
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 3.3
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.7
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 26 5.7
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 140 bits (340), Expect = 2e-34
Identities = 71/161 (44%), Positives = 107/161 (66%)
Frame = +2
Query: 44 SGYHHAALRKLQEPNTSIEPHNIMYPVFLVEKDNAIEPVHSMPNVNRYGVDQLIPLLAEL 223
+GY + LR+ Q I ++MYP+F+ E D+A E + SMPN R+GV++L L L
Sbjct: 11 AGYSNPLLREWQGVRP-ITKSSLMYPIFISEIDDAKEAIDSMPNQFRWGVNRLEEFLGPL 69
Query: 224 VEKGLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTS 403
V+KGL+S+++FG++E+ KD G+ ADS + PVIKA+ ++R FP+L++ACDVCLC YT
Sbjct: 70 VKKGLRSVILFGVIES-KKDYCGSMADSENGPVIKAVKEIRHLFPELVVACDVCLCEYTD 128
Query: 404 XXXXXXXXXXXXIDHEASVKRIAEVALAYAKAGAHVVAPSE 526
I++ SV+RIAEV+ YA AGA +++PS+
Sbjct: 129 HGHCGLLYEDGTINNAKSVERIAEVSGNYALAGAQIISPSD 169
Score = 88.6 bits (210), Expect = 9e-19
Identities = 41/87 (47%), Positives = 54/87 (62%)
Frame = +3
Query: 531 MDNRIKAIKEELVRNKLQNRVSILSYSCKFASSMYGPFRDTMKSSPMEGDRKCYQLPPGS 710
MD R+KAIK++LV +L ++V ++SYS KFAS +GPFR +P GDR CYQLP +
Sbjct: 171 MDGRVKAIKQKLVELELSHKVCVISYSAKFASGFFGPFRAAANGAPKFGDRSCYQLPCNA 230
Query: 711 XXXXXXXXXXDVAEGANFLMVXXGLPY 791
DV EGA+ +MV G PY
Sbjct: 231 RGLAKRAILRDVREGADGIMVKPGTPY 257
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.3 bits (70), Expect = 0.087
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -2
Query: 324 ITGLSTESALVPVGSL--GSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLFTFGIL*TGS 151
I+ S S V S+ S S+ S+ +S STSS S S+P + I + S
Sbjct: 564 ISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSIS-SSS 622
Query: 150 IALSFSTKNTGYIILCGSMLVFGSCNFLKAA 58
LS T +T +++ S ++ GS + L ++
Sbjct: 623 TILSSPTPSTSSLMISSSSIISGSSSILSSS 653
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 AALRKLQEPNTSIEPHNIMYPVFLVEKD-NAIEPVHSMPN 175
A +RKL E N++IE + P+F E D + ++ V S+P+
Sbjct: 71 AQIRKLYEQNSAIEDITFLNPLFYGEIDLSNLDSVKSLPH 110
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 189 PYLFTFGIL*TGSIALSFSTKNTGYIILCGSMLVFGSC 76
P F GI + + L+F+T T Y CGS ++ C
Sbjct: 136 PLTFLPGIACSADMILNFTTLMTIYFASCGSYAIYACC 173
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 552 IKEELVRNKLQNRVSILSYSCKFASSMYGPFRDTMKSSPMEGDRKCYQLPP 704
+ EE+++ + + CK A+ PF DT S E D CY P
Sbjct: 510 VLEEVIKEAYIGKFELFKKVCKMAAC---PFEDTWGFSKEEEDYLCYNTTP 557
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = -2
Query: 312 STESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMS----WSTPYLFTFGIL*TG--S 151
S ++ L PV S ++ PK ++ + S + G + W + F F L + +
Sbjct: 919 SQKAPLSPVESKINLMVAPKRVLNCASDSLRALLAGKTDKSFWGSRIPFLFNKLKSKQKA 978
Query: 150 IALSFSTKNTGYIILCGSMLVFGSC 76
++ SF+T+N+ I+ S L FG C
Sbjct: 979 VSSSFNTENSFLILQAVSPLTFGGC 1003
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 75 YKNRTQASNRTILCILCF 128
Y NR QASN T +C+ C+
Sbjct: 160 YSNRLQASNDTGVCVKCY 177
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 527 VLKEPPHEHQLLHKPMRLQLSSLP 456
+LK+ EHQ LHK M + LSS P
Sbjct: 877 LLKKTNDEHQNLHKEMLVVLSSQP 900
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = -3
Query: 551 CFNPIVHHVLKEPPHEHQLLHKPMRLQLSSLPMLHGRYLLHPSVSHNVRVMYTD----IN 384
CF P+ + + + EH L HK L + ++ S S ++ Y D N
Sbjct: 871 CFRPLPYSEITKRTCEHLLEHKQFESTLKKVATFRNAEGINDSGSFTLKDEYFDYVDPFN 930
Query: 383 IHHMLLTNQERQHAI 339
IH+ +E ++ +
Sbjct: 931 IHYSRNQREEAENIL 945
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 572 SDQLLFDCFNPIVHHVLKEPPHEHQLL 492
+D+LL F PI+ +LK PHE + L
Sbjct: 198 ADRLLDMDFGPIIDKILKIIPHERRTL 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,391
Number of Sequences: 5004
Number of extensions: 66936
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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