Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P22
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 81 1e-15
05_06_0067 - 25314741-25315410,25315498-25315892 33 0.37
01_05_0148 + 18609853-18610058,18610347-18612669 31 1.5
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 29 3.5
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 29 3.5
06_03_1355 - 29522847-29523494 29 4.6
04_04_0196 - 23496899-23496903,23497758-23497994,23498106-23498196 29 6.0
03_05_0456 - 24498212-24499581,24502660-24503071 29 6.0
11_02_0103 - 8320207-8320443,8320540-8320593,8321055-8321162,832... 28 8.0
10_08_0978 + 21994359-21996961,21997089-21998229 28 8.0
07_01_1027 - 8873582-8876275 28 8.0
06_01_0832 - 6269249-6271794,6272083-6272176 28 8.0
04_04_0955 + 29640612-29643305 28 8.0
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 28 8.0
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 8.0
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 81.0 bits (191), Expect = 1e-15
Identities = 40/89 (44%), Positives = 55/89 (61%)
Frame = +3
Query: 525 NMMDNRIKAIKEELVRNKLQNRVSILSYSCKFASSMYGPFRDTMKSSPMEGDRKCYQLPP 704
+MMD R+ AI+ L + VSI+SY+ K+ASS YGPFR+ + S+P GD+K YQ+ P
Sbjct: 264 DMMDGRVGAIRAALDAEGFHD-VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNP 322
Query: 705 GSXXXXXXXXXXDVAEGANFLMVXXGLPY 791
+ D AEGA+ L+V GLPY
Sbjct: 323 ANYREALLETAADEAEGADILLVKPGLPY 351
Score = 66.9 bits (156), Expect = 2e-11
Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 89 TSIEPHNIMYPVFLVE-KDNAIEPVHSMPNVNRYGVDQ-LIPLLAELVEKGLKSILIFGI 262
T+I P N++ P+F+ E +D+A P+ +MP R G L+ + + + G+ S ++F
Sbjct: 119 TTISPANLVLPLFIHEGEDDA--PIGAMPGCYRLGWRHGLLDEVYKSRDVGVNSFVLFPK 176
Query: 263 VETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTSXXXXXXXXXXXXI 442
V K +G A + + V + + L+ FPD+++ DV L PY+S I
Sbjct: 177 VPDALKSQSGDEAYNDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGHDGIVREDGVI 236
Query: 443 DHEASVKRIAEVALAYAKAGAHVVAPSE 526
++ +V ++ + A++ A+AGA VV+PS+
Sbjct: 237 MNDETVYQLCKQAVSQARAGADVVSPSD 264
>05_06_0067 - 25314741-25315410,25315498-25315892
Length = 354
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 498 LVLMWWLLQNMMDNRIKAIKEELVRNKLQNRVSILSYSCKFASSMYGPFRDTMKSSPMEG 677
LV++ LQ M + R+++++ +V NKL++RVS++ + P R + + G
Sbjct: 250 LVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNG 309
Query: 678 DRK 686
+ +
Sbjct: 310 EEE 312
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 474 KSHWLMQKLVLMWWLLQNMMDNRIKAIKEELVRNKLQNRVS 596
+ H L +K ++ WW+ + + R ++ EE+ LQ V+
Sbjct: 353 EDHLLKRKALIRWWIAEGFISKRGRSTMEEVAEGYLQELVN 393
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 602 QYGHSVLQFISDQLLFDCFNPIVHHVLKEPPHEHQLLHKPMRLQLSSLPMLHG 444
Q G++++ I+ ++ P++ H+L PP L M L ++ P+L G
Sbjct: 16 QIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAFPLLKG 68
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 602 QYGHSVLQFISDQLLFDCFNPIVHHVLKEPPHEHQLLHKPMRLQLSSLPMLHG 444
Q G++++ I+ L+ P+V H+L P + L M L ++LP+L G
Sbjct: 52 QIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAALPLLRG 104
>06_03_1355 - 29522847-29523494
Length = 215
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 GSFRT*WTIGLKQSKRSWSEINCKTECPY---CLTRVSSHRRCTDRS 645
G RT W +G+ S + W+ I+C+ Y S CT RS
Sbjct: 168 GRARTRWKVGIFASLKFWTRISCRLHFFYPGNGTVMASDRNTCTSRS 214
>04_04_0196 - 23496899-23496903,23497758-23497994,23498106-23498196
Length = 110
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -2
Query: 234 PFSTSSAKRGMSWSTPYLFTFGIL*TGSIALSFSTKNTGYIILCGSMLVFGSCNFLKAA 58
P + + G W+ ++ +G ++L++S G++ G MLVF + L++A
Sbjct: 22 PKHAAIVRSGTEWTAAAHVITAVIGSGVLSLAWSVAQLGWLAGPGMMLVFAAVTALQSA 80
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 348 ARNFGNAFITGLSTESALVPVGSLGSVSTIPKMSIDL-SPFSTSSAKRGMSWSTPYLFTF 172
AR+ + ++ +AL ++ +P ID +PFS + A RGM W+ Y+ F
Sbjct: 297 ARDIPVGLVGAMALTTALYCALAVTLCLMVPYGEIDPDAPFSVAFADRGMGWA-KYVVAF 355
Query: 171 GIL 163
G L
Sbjct: 356 GAL 358
>11_02_0103 -
8320207-8320443,8320540-8320593,8321055-8321162,
8321406-8321551,8321697-8321892,8323312-8323533
Length = 320
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 321 TGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPY 184
+GL + ALV +G +P+ +I L+P S S +RG+ PY
Sbjct: 83 SGLQDQVALVSIGGWSPNQGVPQPAIILNP-SFSRHRRGLCPGRPY 127
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 16 CQLSVPRKQKRIPSCCLEKVTR 81
C+L+ P QK+I +CC ++ T+
Sbjct: 346 CKLTAPEIQKQIANCCAKETTK 367
>07_01_1027 - 8873582-8876275
Length = 897
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 16 CQLSVPRKQKRIPSCCLEKVTR 81
C+L+ P QK+I +CC ++ T+
Sbjct: 346 CKLTAPEIQKQIANCCAKETTK 367
>06_01_0832 - 6269249-6271794,6272083-6272176
Length = 879
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 16 CQLSVPRKQKRIPSCCLEKVTR 81
C+L+ P QK+I +CC ++ T+
Sbjct: 328 CKLTAPEIQKQIANCCAKETTK 349
>04_04_0955 + 29640612-29643305
Length = 897
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 16 CQLSVPRKQKRIPSCCLEKVTR 81
C+L+ P QK+I +CC ++ T+
Sbjct: 346 CKLTAPEIQKQIANCCAKETTK 367
>01_05_0251 +
19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 16 CQLSVPRKQKRIPSCCLEKVTR 81
C+L+ P QK+I +CC ++ T+
Sbjct: 346 CKLTAPEIQKQIANCCAKETTK 367
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -2
Query: 273 SVSTIPKMSIDLSPFSTSSAKRGMSWSTP-YLFTFGIL*TGSIALSFSTKNTGYIILCGS 97
+V P +++ +SP + R W+T Y +F I G+ A + ++K + LCG
Sbjct: 724 AVEAPPGLAVKVSPERLVFSSR---WTTAAYQVSFEIASGGAGAGAGASKGLSHKFLCGG 780
Query: 96 MLVFG 82
L+FG
Sbjct: 781 RLIFG 785
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,973,615
Number of Sequences: 37544
Number of extensions: 436244
Number of successful extensions: 1137
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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