Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P20
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.36
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 29 0.83
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 28 1.5
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 27 3.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 3.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.4
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 4.4
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.9
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 7.8
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 7.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.36
Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Frame = +1
Query: 148 SSPMTPPSTTRVGRRRCFIDDFRPRLPPWDS---------GSGSGASTLTPRKAQRCSSK 300
S P PP ++RV + RP PP S G+GS S+L P S+
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 301 GVALRTPR*ASPSRLGASIPPPPPFAQSRCSTS----PYRGPRR-SNI*ASPSTVG*HSA 465
++ P P G S PPPPP +S ST P R SN A P + SA
Sbjct: 348 AGSIPLP----PQ--GRSAPPPPP-PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
Query: 466 P 468
P
Sbjct: 401 P 401
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 29.1 bits (62), Expect = 0.83
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 254 PLPEPLSHGGSRGLKSSMKQRLLPTRVVDGGVIGE 150
P P+S G SRG SS++Q++ + ++ G + E
Sbjct: 576 PTTRPVSRGLSRGTSSSLQQKVKASTPLNSGALNE 610
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 425 FDLRGPRYGLVEHRDWANGGGGGIDAPSREGD 330
F+L Y L E +W GG G+ AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.1
Identities = 26/82 (31%), Positives = 39/82 (47%)
Frame = +1
Query: 253 GASTLTPRKAQRCSSKGVALRTPR*ASPSRLGASIPPPPPFAQSRCSTSPYRGPRRSNI* 432
G++ P K R S+ G PR A+P SIPPP P S +SP P + +
Sbjct: 939 GSNMRLPTKLTRPSNDGRKASGPRPAAPP----SIPPPLPV--SNILSSPTSEPPKDHPP 992
Query: 433 ASPSTVG*HSAPTSRRYAIVPP 498
++P + ++P + A VPP
Sbjct: 993 SAPLSKPVSTSPAA-PLARVPP 1013
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 28.3 bits (60), Expect = 1.5
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Frame = +3
Query: 267 NPTKSTAVLFKRGRPPNTTLS----IPLPTRRVNTPAPAVRPITMFDQPIPWAPKVKYLG 434
+P KS+ + ++ ++ LS P R + PAP RP++ P+
Sbjct: 267 SPMKSSRDISRKPSMASSVLSPSDYFPQHRRFQSAPAPIPRPVSTLI-PLTQVRTTASNV 325
Query: 435 VTLDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPGHDLCKCS 614
+ + T RP + L + + + RR + + P H++ +
Sbjct: 326 IKPRPQTTERPSTAQSFRKGGGFLKKTFKKLLRRGSSKRKPSLQPTPPVSYPAHNVPQKG 385
Query: 615 VRSRGPHSLKVI 650
VR PH+LK +
Sbjct: 386 VRPASPHTLKSV 397
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 3.4
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Frame = +1
Query: 139 DNHSSPMTPPSTTRVGRRRCFIDDFRPRLPPWDSGSGSGASTLTPR--KAQRCSSKGVAL 312
++H + T+ R IDD RL S SG LTP+ S G +
Sbjct: 27 ESHPAITHQEKVTQTHRDSVKIDDILTRLSISKSESGQATPVLTPQLEGMNDYFSLGPSK 86
Query: 313 RTPR*ASPSRLGASIPPP------PPFAQSRC-STSPYRGPRRSNI*ASPSTVG*HSAPT 471
RT +P LGA P P P + Q R +TSP R R+++ A+P +G + P
Sbjct: 87 RTGGSMTPG-LGAMSPIPGSGRSSPLYTQPRSRATSPSR-VRQADRFAAPG-IGAGALPI 143
Query: 472 SRR 480
R+
Sbjct: 144 RRK 146
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 473 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 369
DV A C +++ +DLR PR+ + DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 319 PR*ASPSRLGASIPPPPPFA 378
P+ A+P ++ A PPPPP +
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMS 1713
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 407 RYGLVEHRDWANGGGGGIDAPSREGD 330
+Y L+E +DW GG GI P+ + +
Sbjct: 193 KYPLLEGKDWKIGGSFGIMPPNSDAE 218
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 412 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSF*DVSTR 522
P SN + ST H P+S+R +++PP+ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 309 PPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAPKVKYLGVT 440
PP + + P PT NTPA T+ IP P V +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 525 ICRRSKMSLRNKVTLYKTCIRPGHDLC 605
+C+R L N++ C P H LC
Sbjct: 195 VCQRGHSPLSNRIVFCDGCNSPYHQLC 221
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 243 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 338
F+ W+ P+ S +L ++G PP + LS L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,885
Number of Sequences: 5004
Number of extensions: 74211
Number of successful extensions: 222
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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