Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P19
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   5.6  
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ...    29   5.6  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    28   9.7  

>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 254 FQRMYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 358
           F  + F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
            protein Y108G3AL.7 protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 583  EFHTPTTPDLTSISINPLNAVLKGVRA 663
            +F TP TP L+  +I  L+ VLK +RA
Sbjct: 1016 DFFTPDTPRLSPSAIQDLDKVLKKIRA 1042


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 100 GFGRRESIDQGGNGRSG 50
           GFG   + DQGGNG SG
Sbjct: 72  GFGGGSNYDQGGNGNSG 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,142
Number of Sequences: 27780
Number of extensions: 343702
Number of successful extensions: 1066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)