Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P17
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1747 + 29188568-29188715,29188793-29189541                       31   1.5  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   2.0  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    30   2.0  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   4.7  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.1  

>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 378 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 530
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 223 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 339
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 325 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQADYDFGVRG 161
           H P AAA  P VP++    P  L +     GG GL   S S +  G ++ D G+ G
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -1

Query: 277 FVDPIHLKICQYPHGGLGLTNVSMSQMQGQADYDFGVRGETPDRTLRGASRS*GTVMLRF 98
           ++  +H    + P G  G+ N+S+  +    D +    G +PD  L G   +   ++ R 
Sbjct: 6   YLQSLHFNCIRLPDGA-GVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 97  RILPH 83
            I PH
Sbjct: 65  EIYPH 69


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTP 321
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,851
Number of Sequences: 37544
Number of extensions: 503340
Number of successful extensions: 1402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)