Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P16
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 33 0.050
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.62
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.5
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 27 2.5
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.3
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 3.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 4.4
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 7.6
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.6
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 7.6
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 33.1 bits (72), Expect = 0.050
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 511 GGLALMHQATLPWRSRATSTRSSNPRIPYTNHPRLNIHSHQSS 639
G + +H AT P+R + S RSS+ P T P + H SS
Sbjct: 340 GHMRSLHNATSPFRPFSPSYRSSDTHSPRTRSPNVQTHKKTSS 382
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.62
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 530 IKPPSPGDLGLHQPDHQIPEFHTPTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAY 709
I PP P L P + P+ H P+ P + +P P + P + P LSS+AP
Sbjct: 969 IPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLAR--VPPV-PKLSSKAPPVP 1025
Query: 710 LTPSS 724
L PS+
Sbjct: 1026 L-PSA 1029
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 280 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 450
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 451 DVTVEGVNVLATPSSS 498
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 493 SSRITIGGLALMHQATLPWRSRATSTRSSNPRIPYTNHP 609
S + G LA + ++L ++R T SSNPR+P + HP
Sbjct: 69 SKMLPPGSLASVKSSSLAKKARPF-TASSNPRMPKSAHP 106
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/109 (22%), Positives = 40/109 (36%)
Frame = +1
Query: 286 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 465
T T S + + +S Y + + + S P PVT C T+ V
Sbjct: 541 TSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYT 600
Query: 466 GVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNPRIPYTNHPR 612
+ + S+S + +T P +TS +S+ IP T+ R
Sbjct: 601 STPITSPNSTSS---SSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNR 646
Score = 27.1 bits (57), Expect = 3.3
Identities = 23/102 (22%), Positives = 39/102 (38%)
Frame = +1
Query: 280 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 459
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 460 VEGVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNP 585
V +TP ++ ++ + +T P S + SS P
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTP 580
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Frame = +1
Query: 292 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 465
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 466 GVNVLATPSSSRITIGGLALMHQATLPWRSRATSTRSSNP 585
V +TP ++ ++ + +T P S + SS P
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSSTP 521
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 774 IHHSLEIRGRTPLAMPSDEGVRYADGA 694
IHH++ +R ++P+ P VR+ D A
Sbjct: 61 IHHAIIVRTKSPVRRPDGRYVRFDDNA 87
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 527 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 408
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 262 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 375
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 533 KPPSPGDLGLHQPDHQIPEFHTPTTPDLTSIPINPLTPY 649
+PPS L Q + P P P + +P NP TP+
Sbjct: 245 RPPSMALLPSKQSTYW-PALAAPVYPSMKDVPNNPFTPF 282
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 343 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 432
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 599 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 718
P P++ S+P P+ P E +PP++ AP P
Sbjct: 581 PVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 599 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 718
P P+ S+P P+ P E +PP++ P A P
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVP 605
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 599 PTTPDLTSIPINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 718
P P+ S+P P P E +PP++ AP P
Sbjct: 551 PVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVP 590
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 768 HSLEIRGRTPLAMPSDEGVRYADGAS 691
H +++ G TP +MPS+ Y +GA+
Sbjct: 850 HMVDVGGITPGSMPSNSKAIYEEGAA 875
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 512 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 378
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 572 RVDVARDRQGRVA*CIRARPPIVMREDE 489
RVD R +A IR R P+ ++EDE
Sbjct: 472 RVDALRSSANSIASSIRRRHPVNIQEDE 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,377
Number of Sequences: 5004
Number of extensions: 67165
Number of successful extensions: 259
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -