Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P16
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0061 + 948663-948708,949638-949993 31 1.1
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174 29 3.5
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.5
02_05_0084 - 25690346-25691206 29 4.6
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 6.1
04_01_0041 - 464695-464850,467485-469029 29 6.1
01_05_0227 - 19512866-19514983 29 6.1
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 28 8.0
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.0
>09_01_0061 + 948663-948708,949638-949993
Length = 133
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 31 LCL*XVSAASAIPSLVNAFSSSKPPQTDNPSAR 129
LC+ VS+ PS N +SS KPP T P+ R
Sbjct: 91 LCVIHVSSKDHRPSQDNPYSSDKPPPTSPPAQR 123
>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
Length = 514
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 752 GGEPL*PCPVTRG*DTLMEPLMTMEAL 672
GGEPL P P D LM+P +EAL
Sbjct: 33 GGEPLQPAPFVSPLDQLMQPPRPLEAL 59
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 286 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 459
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 460 VEGVNVLATPSSSRITIGGLALMHQ 534
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>02_05_0084 - 25690346-25691206
Length = 286
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 430 DLCWTTADVTVEGVNVL-ATPSSSRITIGGLALMHQATLPWRSR----ATSTRSSNPRIP 594
D+ + V GV + +T +++ +GG+AL A LPW SR AT+ S+ P
Sbjct: 194 DVVYPPPPAAVGGVGMFHSTTTTTGGMLGGMAL---AVLPWVSRGQSPATAAASAYYTSP 250
Query: 595 YTNHPRL 615
Y PRL
Sbjct: 251 YHMSPRL 257
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Frame = +2
Query: 536 PPSPGDLGLHQPDHQIPEFHTPTTPDLTSIPINP-------LTPY*KEFAPGLKPPLSSE 694
P +P P +P +TP P T P+ P L P P + PP+ S
Sbjct: 15 PATPPTAAAGTPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMHSF 74
Query: 695 APS 703
APS
Sbjct: 75 APS 77
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 247 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 423
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 424 TVD 432
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 464 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 372
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 587 EFHTPTTPDLTSIPINPLTPY*KEFAPGLKPPL 685
E TP P + SIP PY K P L+PPL
Sbjct: 293 EPQTPPRPSIASIP-----PYQKPLKPSLRPPL 320
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 238 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 417
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 418 PVTVDLCWTTADVTVEGVNVLATPSS 495
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,294,897
Number of Sequences: 37544
Number of extensions: 524293
Number of successful extensions: 1604
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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