Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P16
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.1  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 553 SRATSTRSSNPRIPYTNHPRLNIHSHQSSDAVLEGVRAGVKASIVI 690
           S  +ST S++P+  Y N    +  SHQ     L G    V  S+++
Sbjct: 101 SNRSSTSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLT-VNVSVLL 145


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 550 RSRATSTRSSNPRIPYTNHPRLNIHSHQSS 639
           R+R    RS  P+I   N+P  N +++ ++
Sbjct: 68  RNRTERERSKEPKIISNNNPLSNNYNYNNN 97


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 545 PGDLGLHQPDHQIPEFHTPTTPDLTSIPINP 637
           PG   + +P +      T +TP   S+P +P
Sbjct: 215 PGHAQMGRPSYTTATMATTSTPGSGSLPASP 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,467
Number of Sequences: 438
Number of extensions: 4856
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)