Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P14
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.010
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.12
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 0.63
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 28 1.9
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 27 2.6
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 27 3.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 3.4
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 27 4.5
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 27 4.5
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 35.5 bits (78), Expect = 0.010
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +1
Query: 286 IHTISTPHGQVQRIVVFKKNGVQAMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAKP 465
IH + + +G V+ I + + A+V +ES+ SA A++ALH ++ +++ AKP
Sbjct: 16 IHALFSAYGNVKDIWMLSPDN-SAIVSYESLSSAIVARDALHNRPVFENHGPVQVMLAKP 74
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.9 bits (69), Expect = 0.12
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +1
Query: 160 ERSNGNNY-MAGEPCRKRKLPARPNHILLYTIINPAYPITVDVIHTISTPHGQVQRIVVF 336
E +N N++ G+ + P H L + N ++ + T + +G V I +
Sbjct: 562 ESNNTNSWPTVGDATIENLTQHEPTHALW--VGNLPSGVSATTVATTFSAYGTVSSIRML 619
Query: 337 KKNGVQAMVEFESVESATRAKEALHGCDIYSGCCTLKIEFAK 462
A + F+SVE+A E L+G I+ G + I FAK
Sbjct: 620 SHKH-SAFLNFDSVETAKHVLEELNGKRIFFGSDPVCISFAK 660
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 29.5 bits (63), Expect = 0.63
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -2
Query: 708 SIVHIIVGLFARVLAV--LTARIFTAASGGSLGWCRVWIVRLGSSTCVLR*LQKRGAP 541
S H + G VLAV F ASG + G CR+W +R SS+ L + P
Sbjct: 180 SYTHSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLP 237
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 268 PITVDVIHTISTPHGQVQRIVVFKKNGVQAMVEFESVESATRAKEALHG 414
P++ + +++I +G+++ + + + A + F S+ SAT A +HG
Sbjct: 173 PLSQERLYSIFRTYGKLRSVTI--NSPTSATLSFSSLRSATSALNCMHG 219
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 448 IEFAKPEKLNVFKNDQ-ESWDYTL 516
+EFA PE+ + KND ES+D+ +
Sbjct: 619 LEFANPEETKILKNDSVESYDWLI 642
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 598 CKAGVVHLCTAVTAKAGRSSVPAASPRIMC 509
C++G +LC+ + GR +P + R C
Sbjct: 105 CRSGKTNLCSKIRETQGRGLMPDGTSRFSC 134
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = -3
Query: 392 LVADSTLSNSTIACTPFFLKTTILCTCPCGVLIVCITSTVMGYAGLMMV*SSMWFGRAGS 213
+V D T + I C F L TT+ P +V ++ + ++ + + + W G
Sbjct: 159 IVVDGTPEKNVITCMKFGLSTTLYYFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDP 218
Query: 212 FR 207
F+
Sbjct: 219 FK 220
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +1
Query: 364 EFESVESATRAKEALHGCDIY 426
+F + E++ R K+++ GCD+Y
Sbjct: 34 KFSNGETSVRIKQSVRGCDVY 54
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 598 CKAGVVHLCTAVTAKAGRSSVPAASPRIMCS 506
CK+G +LC + G+ +P + R C+
Sbjct: 108 CKSGKTNLCGRIRTTQGKGLMPDGTSRFSCN 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,377
Number of Sequences: 5004
Number of extensions: 77405
Number of successful extensions: 318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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