Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P13
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    31   0.27 
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    30   0.36 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    29   0.83 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.1  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.4  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   7.7  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   7.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.7  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 530 SSHPPLRSRLHQPDHQ-IPXFHTPTTPDLTSISINPXXRRTKKEFAPGLKPPLSSEAPSA 706
           +S PP  S   QP HQ    FHTPT P  T +S          +    +  PLS +A S 
Sbjct: 120 NSSPP-NSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASL 178

Query: 707 YLTP 718
             +P
Sbjct: 179 TSSP 182


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 527 ASSHPPLRSRLHQPDHQIPXFHTPTTPDLTSISINPXXRRTKKEFAPGL 673
           A+S    +S L  P + I   +TPT  ++T ++++P      +EF P L
Sbjct: 31  ATSTLSFKSLLEDPVNPIRPVYTPTRTEITPVTLSPIPITPVREFQPYL 79


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +2

Query: 470 QCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQ---IPXFHTPTTPDLTSISINPXX 640
           Q  G+ F   + YW   P     PP+ ++L+ P      I   H  T  DL +  +    
Sbjct: 378 QVTGYQFDDENNYWMILPADHYDPPIEAKLNVPVKNMDYIKLHHVGTNTDLMTHDVASPY 437

Query: 641 RRTKKEF 661
             T +EF
Sbjct: 438 HPTNEEF 444


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 279 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 449
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 450 DVTVEGVNVLATPSSS 497
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 526 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 407
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 374
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 560 HQPDHQIPXFHTPTTPDLTSISINPXXRRTKKEFAPGLKPPLSSEAPSA--YLTPSS 724
           H P + +P +HT    D +SI+ +   + T+  +   +    +S   SA    TPSS
Sbjct: 282 HSPTNTLPSYHTEADLDNSSIASSNRTQHTEDNYNKDVSDAQNSLGQSAVDLTTPSS 338


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 342 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 431
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 511 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 377
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 468 VNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPXSIHQ---PPQT*H-PFPSIP 635
           V  +++ SSS + +G +   H ++LP  +G     +    + H    PPQ+ +   PS+P
Sbjct: 166 VATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQSGYSSMPSLP 225


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 538 PSPAISATSTRSSNPRIPYTNHPRLNIHFHQSPXT 642
           P P+IS T+T SS      ++ P    HF  +P T
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLT 307


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +3

Query: 279 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 458
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 459 VEGVNVLATP 488
                V +TP
Sbjct: 540 YTSTPVTSTP 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,421
Number of Sequences: 5004
Number of extensions: 62401
Number of successful extensions: 223
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)