Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P10
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.60
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.8
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 27 2.4
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.4
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.4
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 29.5 bits (63), Expect = 0.60
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +1
Query: 544 LAISATSTRSSNPRIPYTNHPRT*HPFPSIPXTPY*KEFAPGLKPPLSSEAPSAYLTPSS 723
LA+ AT T S+NP + + + + P + + K F+ PP++++ P +L P+S
Sbjct: 682 LALPATVTTSANP-LGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNS 738
Query: 724 LGMAKGVSP 750
AK V P
Sbjct: 739 PEYAKTVIP 747
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 449 DVTVEGVNVLATPSSS 496
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +3
Query: 534 PPSPGDLGYINPIIKSPNSIHQPPQNLTSISINPLXAVLEGVRAGVKASVVI 689
PP PGD+ + NP++ P+ P + P + AG + I
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSETENFLPTPEPPKIASANAGSSNEISI 269
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/109 (22%), Positives = 40/109 (36%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VEGVNVLATPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPEFHTPTT 604
V +TP ++ ++ + +T P S + P TP T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVT 587
Score = 27.1 bits (57), Expect = 3.2
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Frame = +2
Query: 290 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 463
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 464 GVNVLATPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPEFHTPTT 604
V +TP ++ ++ + +T P S + P TP T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVT 528
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 10 DLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMXYA 141
D+F + +P+ ++A IPSL A SK P T+ SM YA
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTEK-HVSSMEYA 281
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 373
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +1
Query: 571 SSNPRIPYTNHPRT*HPFPSIPXTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSP 750
SSN +P P + SIP P + P PP APS P L ++ VS
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 751 P 753
P
Sbjct: 388 P 388
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.3
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +1
Query: 523 YASSHPPLA-ISATSTRSSNPRIPYTNHPRT*-HPFPSIPXTPY*KEFAPGLKPPLSSEA 696
+A P L I +S ++ P P P++ P S P P +P PP+ S+A
Sbjct: 105 FAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKA 164
Query: 697 P--SAYLTPSSLGMAKGVSPP 753
P + L P + A SPP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPP 185
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,872
Number of Sequences: 5004
Number of extensions: 65429
Number of successful extensions: 245
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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