Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P09
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 142 4e-35
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 142 4e-35
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 28 1.5
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 4.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 6.0
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 7.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 142 bits (345), Expect = 4e-35
Identities = 72/182 (39%), Positives = 106/182 (58%)
Frame = +1
Query: 307 YIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFK 486
Y+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ + + +SI ++ +
Sbjct: 92 YVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELE 149
Query: 487 KMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPXRFCV 666
++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WAREH EK + +
Sbjct: 150 RIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIK-ST 208
Query: 667 XPXMK*LTALVSPRAXDTXGVTSRXAHKKXYPVRXTXXLXKXCLXLXXXHPSRGSFTVPR 846
+ + + R G T+R K+ R T + + HP+ +TV R
Sbjct: 209 FEQNEMIDVIGVTRGKGNEGTTARWGTKRL--PRKTHRGLRKVACIGAWHPANVQWTVAR 266
Query: 847 AG 852
AG
Sbjct: 267 AG 268
Score = 138 bits (335), Expect = 7e-34
Identities = 60/78 (76%), Positives = 71/78 (91%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 228 KINKKEIVEAVTIIETPP 281
K++K+EI+EAVTIIETPP
Sbjct: 66 KMHKREILEAVTIIETPP 83
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 142 bits (345), Expect = 4e-35
Identities = 72/182 (39%), Positives = 106/182 (58%)
Frame = +1
Query: 307 YIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFK 486
Y+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ + + +SI ++ +
Sbjct: 92 YVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST--QSINRELE 149
Query: 487 KMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPXRFCV 666
++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WAREH EK + +
Sbjct: 150 RIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIK-ST 208
Query: 667 XPXMK*LTALVSPRAXDTXGVTSRXAHKKXYPVRXTXXLXKXCLXLXXXHPSRGSFTVPR 846
+ + + R G T+R K+ R T + + HP+ +TV R
Sbjct: 209 FEQNEMIDVIGVTRGKGNEGTTARWGTKRL--PRKTHRGLRKVACIGAWHPANVQWTVAR 266
Query: 847 AG 852
AG
Sbjct: 267 AG 268
Score = 138 bits (334), Expect = 9e-34
Identities = 59/78 (75%), Positives = 71/78 (91%)
Frame = +3
Query: 48 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 227
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 228 KINKKEIVEAVTIIETPP 281
K++K+EI+EAVT+IETPP
Sbjct: 66 KMHKREILEAVTVIETPP 83
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 209 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMSGVLKIF 42
F N VG G+I D S + +R+VF D +G L ++SH +P + V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 36 RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 155
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 27 PACRTENFQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 203
P C H + S +P + G K FP D+P S P+ + G T +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350
Query: 204 REPDRPGSKI 233
+ P++ +I
Sbjct: 351 KVPEKSNKEI 360
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 502 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 612
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 6.0
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 308 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 460
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 224 FKNQQERDRGGCHHHRDSSXWFVSVLLDTLRPLMDYAL 337
FK++ + G HH D F++ L TL L D +L
Sbjct: 94 FKDEHLAQKKGLHHFADLKEIFLNKNLSTLDGLQDASL 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,600
Number of Sequences: 5004
Number of extensions: 64791
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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