Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P08
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0213 + 19109369-19109581,19109803-19109873,19110175-191102...    30   2.1  
01_07_0350 + 42941976-42942401,42942510-42942737,42943201-429433...    29   4.8  

>05_04_0213 +
           19109369-19109581,19109803-19109873,19110175-19110229,
           19110441-19110626
          Length = 174

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = -3

Query: 406 TGAESXVPXGGCSRV*QYHVRPPQAFRGHQPSAAAPLPCVPSQSFVDPIHLKICLYSQRW 227
           T A+  VP G  S     +  PP     H P   A LP + S S V+   L  C  S +W
Sbjct: 44  TEAQLFVPVGTRSNHRSPYENPPLP-SNHNPIGGAQLPLLLSSSIVNHNGLTCCTTSSKW 102


>01_07_0350 +
           42941976-42942401,42942510-42942737,42943201-42943380,
           42943515-42943730,42943854-42943955,42944377-42944439,
           42944526-42944594,42945662-42945730,42947003-42947069,
           42947449-42947514,42947600-42947697,42947820-42947857,
           42947929-42948016,42948101-42948373,42948470-42948535,
           42948624-42948779
          Length = 734

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -2

Query: 374 LQPRLAVPRQASTSVPRTPAKCCSPTPLRSKSVVCRSNSFEDLPVFAAVDSD 219
           L P +A P +    VP+TP+   S T    + + CRS+S   L  FA +D D
Sbjct: 7   LDPAVASPARLLLDVPKTPSP--SKTTYSDRFIPCRSSS--RLHNFALLDRD 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,446,914
Number of Sequences: 37544
Number of extensions: 363351
Number of successful extensions: 1115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)