Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P07
         (974 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0110 - 741968-742279                                             31   1.4  
05_01_0493 + 4113869-4116728,4116859-4117370                           29   7.4  

>05_01_0110 - 741968-742279
          Length = 103

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 21/48 (43%), Positives = 24/48 (50%)
 Frame = +1

Query: 454 TAKRGCNHRRGLRSSXARVSNQRAPSPGXSRLGX*PPXXSXXXXPIGP 597
           TA+ G  HRRGL      VS +   SP   RLG  PP  +    PIGP
Sbjct: 55  TARPGAPHRRGLG-----VSRRHQGSP-CHRLGAAPPPGAPTPPPIGP 96


>05_01_0493 + 4113869-4116728,4116859-4117370
          Length = 1123

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 229 SSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILAD-LQMNWIDKRLSWNAGXMGL 405
           +S R  G+LPP      NLT    H N    E   R+  D L + ++D  LS N    G+
Sbjct: 493 ASNRLAGALPPEMSGCRNLTFVDLHDNAISGELPPRLFRDWLSLQYLD--LSDNVIAGGI 550

Query: 406 XHXAGVLGTLVE 441
               G+L +L +
Sbjct: 551 PPEIGMLTSLTK 562


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,755,057
Number of Sequences: 37544
Number of extensions: 381001
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)