Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P07
(974 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.23
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.31
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 33 0.41
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.54
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.54
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 32 0.54
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.94
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 31 0.94
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 31 0.94
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.94
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 31 0.94
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 31 0.94
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 30 2.9
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 29 5.0
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 29 5.0
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 29 6.6
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 29 6.6
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 29 6.6
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 29 6.6
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 6.6
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 29 6.6
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 6.6
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 283 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 390
L +L+ ++E E V ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.31
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
PP +I + L++ ++ + E E L D + +W D RLSW+ G
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 32.7 bits (71), Expect = 0.41
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 292 HLRHANIRESESTVRILADLQMNWIDKRLSWNA 390
+L+ + E E V ++ +L W D RLSWNA
Sbjct: 81 NLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNA 113
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.54
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 274 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 387
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.54
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 274 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 387
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 32.3 bits (70), Expect = 0.54
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 387
PP +++ + + + L+ ++ E E V L D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 31.5 bits (68), Expect = 0.94
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 292 HLRHANIRESESTVRILADLQMNWIDKRLSWNA 390
+L+ ++E + + ++ ++ W D RLSWNA
Sbjct: 80 YLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
PP + V L L H I E + T+ +L + +W+D L+W+ G
Sbjct: 83 PPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFG 132
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 283 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 387
L +L+ ++E V ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 244 IGSLPPX----SKIVVNLT-LHLRHANIRESESTVRILADLQMNWIDKRLSWN 387
I S+PP + +N L+H + E + I L+++W D RL WN
Sbjct: 47 IASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWHDDRLMWN 99
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 256 PPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXM-GLXH 411
PP ++ ++ + L H I E +++L + W D LSW G+ H
Sbjct: 86 PPDGRVDISHNIELVHIIGINELNQNMQVLVYIVQQWTDASLSWKVEEFRGIKH 139
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 307 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 402
++ E + + + L +W+D RLSWN G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFG 75
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 295 LRHANIRESESTVRILADLQMNWIDKRLSWNA 390
L+ + E V ++ ++ W D RLSWNA
Sbjct: 81 LKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 250 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWN 387
S P + + L L L ++ E + + L+ WID++LSW+
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 250 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWN 387
S P + + L L L ++ E + + L+ WID++LSW+
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 250 SLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWN 387
S P + + L L L ++ E + + L+ WID++LSW+
Sbjct: 45 STSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWD 91
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 422 SSERLWRPDVVLLNAAA 472
SS+ +W+PDV+L N+AA
Sbjct: 105 SSDHIWKPDVLLYNSAA 121
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 226 RSSQRTIGSLPPXSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSW 384
R + T+ S P +VV+L + L+ N+ E E + + A L+ W D+ L W
Sbjct: 35 REERPTLDSSKP---VVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLRW 85
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 289 LHLRHAN-IRESESTVRILADLQMNWIDKRLSWN 387
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 283 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 387
L L+ + E + V ++ ++ W D RL+WN
Sbjct: 78 LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,266
Number of Sequences: 27780
Number of extensions: 315780
Number of successful extensions: 721
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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