Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P06
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.9  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.5  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 94  VHQLISDKESAPATMDITQCSRIPXP 17
           +HQ IS K+ +PAT   ++CS I  P
Sbjct: 266 MHQ-ISKKKLSPATPKGSKCSMITTP 290


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 552 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLERP 445
           D Q   Y    + +  V  + VRV LGP  D   RP
Sbjct: 514 DHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRP 549


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 759 ILYTGASDSNCLCILDSQSXAHFRPPQS 842
           +L+T   D+  +C+       HFR PQ+
Sbjct: 307 VLFTMILDTFSICVTVVVLNVHFRSPQT 334


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 41  CDIHCCWRGF 70
           CD+ CC RG+
Sbjct: 113 CDLMCCGRGY 122


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 41  CDIHCCWRGF 70
           CD+ CC RG+
Sbjct: 114 CDLMCCGRGY 123


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 47  IHCCWRGFFITDKLVDILCLSVIKCQ 124
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,109
Number of Sequences: 438
Number of extensions: 4859
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)