Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P05
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    30   2.6  
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150...    28   7.9  

>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 512 PDAQRTALKMKIKRTKPGTKSSEAKHEI-VKSNETNGE 622
           PDAQRT  + K +  K G+K   +K  +  K N+++GE
Sbjct: 322 PDAQRTEKQAKQESRKWGSKKGTSKRRVQKKKNDSDGE 359


>03_06_0367 -
           33413530-33413710,33414347-33414681,33414908-33415023,
           33415107-33415235,33415657-33415723,33415780-33415854,
           33416054-33416149,33416404-33416592
          Length = 395

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 128 VSSDGALKSCR-YVRIVSVLTIVPV*CF-IGLCLFWIAIANHH*IYLGTGYN 277
           VS    L S R Y+ + S++ ++   CF + +  FW+A+ NH   ++ +G N
Sbjct: 134 VSPSAKLSSGRIYLGMHSLIDVIAGICFGVVILAFWLAVHNHVDAFVVSGQN 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,146
Number of Sequences: 37544
Number of extensions: 286735
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)