Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_P04
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 38 0.013
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 32 0.49
04_04_1125 + 31085106-31085714 30 2.6
04_04_1518 - 34129542-34130001,34130567-34130652 29 3.5
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.5
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 29 4.6
11_06_0610 - 25449085-25453284 29 6.1
04_01_0041 - 464695-464850,467485-469029 29 6.1
01_05_0227 - 19512866-19514983 29 6.1
07_01_0862 - 7172083-7172931 28 8.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 28 8.0
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.0
>06_03_1310 + 29238644-29240260
Length = 538
Score = 37.5 bits (83), Expect = 0.013
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 535 PPSPGDLGYINPII--KSPIPYTNHPRT*HPFPSIPXTPY*KEFAPGLKPPLSSEAPSAY 708
PP+ G P+ +SP+P+ PR P P P +P P PP SE+P +
Sbjct: 366 PPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSS 423
Query: 709 LTPS-SLGMAKGVSPP 753
+ PS S + G SPP
Sbjct: 424 MPPSTSPPSSHGASPP 439
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 32.3 bits (70), Expect = 0.49
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 545 LAISATSTRSSNPRFHTPTTP 607
+A S+T+TR S PR H PTTP
Sbjct: 1 MAASSTATRLSPPRLHAPTTP 21
>04_04_1125 + 31085106-31085714
Length = 202
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 535 PPSPGDLGYINPIIKSPIPYTNHPRT*HPFPSIPXTP 645
PP+P P +P P+T P T P P+ P TP
Sbjct: 59 PPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATP 95
>04_04_1518 - 34129542-34130001,34130567-34130652
Length = 181
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 580 SPIPYTNHPRT*HPFPSIPXTPY*K--EFAPGLKPPLSSEAPSAYLTPSSLG 729
SP P +HP P SIP P + GL PP S+ +PS L+ + LG
Sbjct: 106 SPSPRRHHPHQASPLVSIPTRPPCRIPHRGQGL-PPASTTSPSPSLSLNPLG 156
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 458
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/97 (25%), Positives = 34/97 (35%)
Frame = +1
Query: 538 PSPGDLGYINPIIKSPIPYTNHPRT*HPFPSIPXTPY*KEFAPGLKPPLSSEAPSAYLTP 717
P+PG GY +P T P P S+P + AP +PP + P P
Sbjct: 116 PAPGIPGYPGAPNVPTMPQTGAPPGSMPPGSMPPGSMPMQMAPLPRPP--TLPPPTSGAP 173
Query: 718 SSLGMAKGVSPPYFQVNDESQASRLISRHPRILRSPP 828
+ G P +Q N A P + PP
Sbjct: 174 GAPIPNSGAPPAMYQTNPPQPAGPTSGAPPPVSAPPP 210
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +1
Query: 568 PIIKSPIPYTNHPRT*HPFPSIPXTPY*K------EFAPGLKPPLSSEAPSAYLTPSSLG 729
P++ P+ + H HP P P P K P K P E P+A TP+S G
Sbjct: 400 PVLARPVDCSKHVCPGHPTPGKPSEPPEKPPLIPVPVGPPEKSPAYEEPPAAPSTPTSHG 459
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 422
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 423 TVD 431
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 463 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 371
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = +1
Query: 535 PPSPGDLGYINPII--KSPIPYTNHPRT*HPFPSIPXTPY*KEFAPGLKPPLSSEAPSAY 708
PP L Y P+ K P+P + P P P TP P K PL +P+A
Sbjct: 164 PPRKKPLLYPPPLPPKKKPLPPPSPPPQ-PPLPEKENTPLPPLLLPPKKKPLPPPSPTAA 222
Query: 709 LTPSSLGMAKGVSPPYF 759
+ + PP F
Sbjct: 223 AKEEPIELEHAAPPPPF 239
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 402 PSLKIPVTVDL--CWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSR--LHQP 569
P KIP +++ C T+ D T ++ S+ +ITIG L L+ + WR R LH+P
Sbjct: 220 PGSKIPCNLEVSDCLTSHDGTSA-----SSSSNEKITIGLLFLLQKLCKNWRLRRFLHRP 274
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 237 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 417 PVTVDLCWTTADVTVEGVNVLATPSS 494
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,815,426
Number of Sequences: 37544
Number of extensions: 511718
Number of successful extensions: 1593
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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