Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P03
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.2  
07_03_1747 + 29188568-29188715,29188793-29189541                       29   5.0  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   6.7  
08_02_0813 + 21459776-21461128                                         28   8.8  
03_02_0111 + 5688649-5688942                                           28   8.8  
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277...    28   8.8  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.8  
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     28   8.8  

>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 430 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSVVCRSNS 281
           T + S    GGCS    +   PP AFRG+  +   P+    + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 399 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSS 542
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESES 257


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -1

Query: 297 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 118
           ++  +H   C+    G G+ N+S+  +    D +    G SPD  L G   +   ++ R 
Sbjct: 6   YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 117 RILPH 103
            I PH
Sbjct: 65  EIYPH 69


>08_02_0813 + 21459776-21461128
          Length = 450

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 314 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 493
           +G++ C  WL +  R   P   LL+   TT      R  V+      W K+  IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288

Query: 494 QL 499
           +L
Sbjct: 289 EL 290


>03_02_0111 + 5688649-5688942
          Length = 97

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +3

Query: 300 TELERRGSGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 473
           T L    + AAA G  P     G  +   +   PPP   L+ P+Y + AP    SA+T
Sbjct: 28  TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83


>02_05_0822 +
           32025992-32026696,32027237-32027314,32027547-32027713,
           32027811-32027885,32028624-32028742,32028908-32029204,
           32029275-32029362,32029467-32029572,32029727-32029837,
           32030520-32030683,32031237-32031357,32031958-32032182,
           32032267-32032457,32032658-32032825,32032911-32033016,
           32033301-32033438,32033533-32033697,32033777-32033980,
           32034341-32034535,32034603-32034674,32034797-32034949
          Length = 1215

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 367 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 281
           PP+ FR GH P AAAP PLR++     S S
Sbjct: 32  PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 428 GRGERSPRRWLQPRLAVPRQASTSVPRTP 342
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 311 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 490
           T G   CS++L    R+W     +++   +      LRA   +N S +    +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187

Query: 491 MQLDN 505
             LDN
Sbjct: 188 --LDN 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,779,726
Number of Sequences: 37544
Number of extensions: 479963
Number of successful extensions: 1435
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)