Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P01
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    37   0.003
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    23   2.0  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   3.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.3  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    26   7.6  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -3

Query: 308 RGS-CHFCGKPGHRAEGCCDRYCSQTFFDIPAKPEQPPH-PWAPGSRLQVSCYVCGDASH 135
           +GS C+ C + GH+A  C +    +T +            P +P  R    CY CG   H
Sbjct: 34  KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGH 93

Query: 134 VASGC 120
           +A  C
Sbjct: 94  IARDC 98



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -3

Query: 299 CHFCGKPGHRAEGCCDRYCSQTFFDIPAKPEQPPHPWAPGSRLQVSCYVCGDASHVASGC 120
           C+ CG+ GH+A  C              K  +   P     + + +CY CG A H+   C
Sbjct: 19  CYNCGENGHQARECTKGSICYNCNQTGHKASECTEP-----QQEKTCYACGTAGHLVRDC 73



 Score = 29.1 bits (62), Expect = 0.82
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 182 GSRLQVSCYVCGDASHVASGCSM 114
           G R  ++CY CG   H A  C+M
Sbjct: 111 GHRSNMNCYACGSYGHQARDCTM 133


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 23.4 bits (48), Expect(2) = 2.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 173 LQVSCYVCGDASHVASGCSMR 111
           + + C  CG   H+A  C +R
Sbjct: 332 MNIVCRHCGSIGHIARDCPVR 352



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 299 CHFCGKPGHRAEGCCDR 249
           C  CG  GHR   C +R
Sbjct: 311 CQNCGNVGHRRFDCPER 327


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 573 KTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLRKPXANTCQART 719
           +TF HHAN  P++IL    +    R    L    + ++K   N    +T
Sbjct: 13  RTFAHHANLTPRKILHDLPEAAHARKQIPLRPGVILVKKGMTNAWDEKT 61


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 164  SCYVCGDASHVASGCSMRFNFCSL 93
            +CY CG A H    C +R  F  L
Sbjct: 1805 TCYKCGKADHNLRECKLRIRFQGL 1828


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 164  SCYVCGDASHVASGCSMRFNFCSL 93
            +CY CG A H    C +R  F  L
Sbjct: 1805 TCYKCGKADHNLRECKLRIRFQGL 1828


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 438 HGLPILEPPRSGCTCARARRLVGDLKRKNEDPDKEPKRSR 319
           H LP++    S C     R  + D+   +EDP     R R
Sbjct: 241 HKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRR 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,618
Number of Sequences: 5004
Number of extensions: 58394
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)