Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_P01
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    24   1.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   6.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 356 KTKILIKNQNALEVFFRGSC 297
           K K LIK++N    FF GSC
Sbjct: 515 KRKGLIKSENEAADFFSGSC 534


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 356 KTKILIKNQNALEVFFRGSC 297
           K K LIK++N    FF GSC
Sbjct: 515 KRKGLIKSENEAADFFSGSC 534


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 356 KTKILIKNQNALEVFFRGSC 297
           K K LIK++N    FF GSC
Sbjct: 515 KRKGLIKSENEAADFFSGSC 534


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 210 RFCWNIEKSLRAVSVATPFGTMPRFSAEMA 299
           ++C   + S+  VS+   FG +P+F  EMA
Sbjct: 65  KYCETYKNSIYDVSMT--FGPVPKFEGEMA 92


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +2

Query: 23  LCLKS-RTLNFLNQHSSFY 76
           LC K  RTLN LN H S Y
Sbjct: 406 LCHKVFRTLNSLNNHKSIY 424


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 17/59 (28%), Positives = 21/59 (35%)
 Frame = +2

Query: 548 PPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEAXREHLSSTHKH 724
           PPA    S   LP     T T  T+  A    T +T+ T            HL + H H
Sbjct: 96  PPA----SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHH 150


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 350 KILIKNQNALEVFFRGSCHFCGKPGH 273
           K+L+ N   LEV    +  FC +  H
Sbjct: 75  KVLVHNVKELEVLMMQNRKFCAEIAH 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,230
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)