Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_O17
(845 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 52 5e-09
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 48 1e-07
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 47 2e-07
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 46 3e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 46 6e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 44 2e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 3e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 43 4e-06
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 34 0.001
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 33 0.003
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.004
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 32 0.008
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 31 0.010
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 29 0.071
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 28 0.12
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 26 0.38
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 4.7
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 4.7
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 4.7
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 4.7
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 4.7
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 23 4.7
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 4.7
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 6.2
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.2
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 52.4 bits (120), Expect = 5e-09
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Frame = +2
Query: 83 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 241
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 242 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERVWRPDVVLLNAAATTAGDYAL-RAR 415
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 416 VSNNGSVSW 442
+ G V W
Sbjct: 127 LHYTGKVLW 135
Score = 25.8 bits (54), Expect = 0.50
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMD 560
+P D QTC KFGS ++ ++D
Sbjct: 152 FPFDQQTCFMKFGSWTYDGIQID 174
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 48.0 bits (109), Expect = 1e-07
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +2
Query: 101 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 259
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 260 LQMNWIDKRLSWNAGEWGCSTWL-VSSERVWRPDVVLL-NAAATTAGDYALRARVSNNGS 433
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 434 VSW 442
V W
Sbjct: 137 VEW 139
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 477 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 560
+ ++ +P D QTC KFGS ++ ++D
Sbjct: 151 IDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 48.0 bits (109), Expect = 1e-07
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Frame = +2
Query: 71 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 229
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 230 SESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERVWRPDVVLLNAAATTAGDYAL 406
T + ++ W D +L WN ++G T V SE +W PD+VL N A G+Y +
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEV 119
Query: 407 ----RARVSNNGSVSW 442
+A + + G V W
Sbjct: 120 TIMTKAILHHTGKVVW 135
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 477 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 560
+ ++ +P D QTC KFGS ++ +D
Sbjct: 147 IDVEYFPFDEQTCFMKFGSWTYDGYTVD 174
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 47.2 bits (107), Expect = 2e-07
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Frame = +2
Query: 128 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 292
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 293 WNAGEWGCSTWL-VSSERVWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 442
WN E+G L V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
Score = 27.1 bits (57), Expect = 0.22
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 477 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 560
+ ++ +P D Q+C KFGS +N ++D
Sbjct: 160 INVEYFPFDEQSCIMKFGSWTYNGAQVD 187
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 46.4 bits (105), Expect = 3e-07
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Frame = +2
Query: 128 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 292
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 293 WNAGEWGCSTWL-VSSERVWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 442
W E+G L V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 26.2 bits (55), Expect = 0.38
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 477 MQLDNWPNDMQTCTFKFGSRMHNSDEMD 560
+ ++ +P D QTC KFGS ++ ++D
Sbjct: 155 IDVEYFPFDEQTCVLKFGSWTYDGFKVD 182
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.6 bits (103), Expect = 6e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 101 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 265
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 266 MNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVL 367
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
Score = 25.4 bits (53), Expect = 0.66
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEM 557
WP D+ CT S H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 45.6 bits (103), Expect = 6e-07
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +2
Query: 128 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 292
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 293 WNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTAGDYALRARVSNNGS 433
WN E+ G ++ ++W+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 25.4 bits (53), Expect = 0.66
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMDFV 566
+P D Q C KFGS ++ +++D V
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLV 210
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 45.6 bits (103), Expect = 6e-07
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +2
Query: 128 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 292
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 293 WNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTAGDYALRARVSNNGS 433
WN E+ G ++ ++W+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 25.4 bits (53), Expect = 0.66
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMDFV 566
+P D Q C KFGS ++ +++D V
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLV 210
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 218 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTA 391
++ E + A L++ W+D L WN E+ G ++ ++W+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 392 GDYALRARVSNNGS 433
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
Score = 25.4 bits (53), Expect = 0.66
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMDFV 566
+P D Q C KFGS ++ +++D V
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLV 142
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +2
Query: 182 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPD 358
+V L+LH ++ E + + W D L WNA E+ G V RVWRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 359 VVLLNAAATTAGDYALRAR--VSNNGSVSW 442
+L N A + VS+ G V W
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 43.6 bits (98), Expect = 2e-06
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Frame = +2
Query: 128 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 292
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 293 WNAGEWGCSTWL-VSSERVWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 442
W E+G L V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 26.6 bits (56), Expect = 0.29
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 474 SMQLDNWPNDMQTCTFKFGSRMHNSDEMD 560
S+ ++ +P D+QTC K GS ++ ++D
Sbjct: 154 SIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 43.2 bits (97), Expect = 3e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +2
Query: 107 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 274
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 275 IDKRLSWNAGEWGCSTWLVSSERVWRPDVVLLN 373
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 30.3 bits (65), Expect = 0.023
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 450 RLDISTPISMQLDNWPNDMQTCTFKFGS 533
RL I M L+N+P D Q C +FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 43.2 bits (97), Expect = 3e-06
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +2
Query: 179 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERVWR 352
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + ++VW+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 353 PDVVLLNAAATTAGDYALRAR----VSNNGSVSW 442
PD+VL N A G+Y +R + + NG V W
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLW 141
Score = 28.3 bits (60), Expect = 0.094
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEM 557
+P D QTC KFGS N D++
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQV 179
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 218 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTA 391
++ E + A L++ W+D L WN E+ G ++ ++W+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 392 GDYALRARVSNNGS 433
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.66
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMDFV 566
+P D Q C KFGS ++ +++D V
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 218 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTA 391
++ E + A L++ W+D L WN E+ G ++ ++W+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 392 GDYALRARVSNNGS 433
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.66
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMDFV 566
+P D Q C KFGS ++ +++D V
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 218 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTA 391
++ E + A L++ W+D L WN E+ G ++ ++W+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 392 GDYALRARVSNNGS 433
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.66
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMDFV 566
+P D Q C KFGS ++ +++D V
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 218 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTA 391
++ E + A L++ W+D L WN E+ G ++ ++W+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 392 GDYALRARVSNNGS 433
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 25.4 bits (53), Expect = 0.66
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMDFV 566
+P D Q C KFGS ++ +++D V
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 218 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVLLNAA-ATTA 391
++ E + A L++ W+D L WN E+ G ++ ++W+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 392 GDYALRARVSNNGS 433
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 25.8 bits (54), Expect = 0.50
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 477 MQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 566
M + +P D Q C KFGS ++ +++D V
Sbjct: 113 MDIAWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 42.7 bits (96), Expect = 4e-06
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Frame = +2
Query: 59 YQFLLTCAIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NI 223
+ + A+A++ + +++ LL TY+ E P ++ +V++ L L ++
Sbjct: 4 WTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDV 63
Query: 224 RESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERVWRPDVVLLNAA-ATTAGD 397
E + L++ W D + WN ++G L + R+W+PDV++ N+A G
Sbjct: 64 DEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGT 123
Query: 398 YALRARVSNNGS 433
Y V NNG+
Sbjct: 124 YPTNVVVKNNGT 135
Score = 23.0 bits (47), Expect = 3.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 492 WPNDMQTCTFKFGSRMHNSDEMD 560
+P D Q C KFGS ++ ++D
Sbjct: 155 FPFDDQRCEMKFGSWTYDGFQLD 177
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 39.9 bits (89), Expect = 3e-05
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Frame = +2
Query: 53 FCYQFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHL--RHAN 220
F + +LL C ++ T+L + L YD P S +I N+T+ L +
Sbjct: 27 FGFSYLLNCK-----NYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLME 81
Query: 221 IRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERVWRPDVVLLNAAATT--- 388
+ S + + + + + W D LSW ++ G + V S+ +W PD+ + N+ T
Sbjct: 82 FDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMTFDQ 141
Query: 389 AGDYALRARVSNNGSVSWYKALGH 460
G V ++GSVS ++ H
Sbjct: 142 TGIPPTTCLVFSSGSVSCVPSVKH 165
Score = 30.7 bits (66), Expect = 0.018
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 489 NWPNDMQTCTFKFGSRMHNSDEMDFVXDXR 578
+WP D C FGS +H+ +E++ D +
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKK 204
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 34.3 bits (75), Expect = 0.001
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +2
Query: 128 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 286
++D++L YD E+ D +V + L +R A I + + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 287 LSWN--AGEWGCSTWLVSSERVWRPDVVLLN 373
L +N G T L + RVW PD+ N
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSN 124
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 33.1 bits (72), Expect = 0.003
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Frame = +2
Query: 107 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 274
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 275 IDKRLSWNAGEWGCSTWLVSSE---RVWRPDVVLLNA------AATTAGDYALRARVSNN 427
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 428 GSVS 439
GS++
Sbjct: 124 GSIT 127
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.7 bits (71), Expect = 0.004
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +2
Query: 116 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 280
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 281 KRLSWNAGEWGCSTWLVSSERVWRPDVVLLN 373
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Score = 26.6 bits (56), Expect = 0.29
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 450 RLDISTPISMQLDNWPNDMQTCTFKFGS 533
RL I M+L N+P D Q+C GS
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.9 bits (69), Expect = 0.008
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Frame = +2
Query: 107 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 274
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 275 IDKRLSWNAGEWGCSTWLVSSE---RVWRPDVVLLNA------AATTAGDYALRARVSNN 427
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 428 GSVS 439
GS++
Sbjct: 124 GSIT 127
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.010
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Frame = +2
Query: 128 MIDSLLATYDR------ESPPDSKIVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKR 286
++D++L YD E+ D VV + + +R + I + + + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQLTFREQWLDER 94
Query: 287 LSWN--AGEWGCSTWLVSSERVWRPDVVLLN 373
L +N G T L + RVW PD+ N
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSN 124
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 28.7 bits (61), Expect = 0.071
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 450 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVXD 572
+L + +M +P+D Q C + S H +DEM F D
Sbjct: 156 KLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 27.9 bits (59), Expect = 0.12
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +3
Query: 444 IKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 566
+ +L + +M+ +++P+D Q C+ S H + ++ F+
Sbjct: 123 MSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 26.2 bits (55), Expect = 0.38
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 450 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVXD 572
RL + ++L+ +P D+Q C F S HN +M D
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDMVLYWD 175
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.7
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLRSRSRSFQ 225
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.7
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLRSRSRSFQ 225
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.7
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLRSRSRSFQ 225
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.7
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLRSRSRSFQ 225
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.7
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLRSRSRSFQ 225
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.6 bits (46), Expect = 4.7
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLRSRSRSFQ 225
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.6 bits (46), Expect = 4.7
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLRSRSRSFQ 225
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 6.2
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = -1
Query: 563 EIHFVTIVHPRTELERASLHVVGPI-V*LHRNWSANVQALYTRRRSRY*IHGXGERSPRR 387
+IH V P T + ++ P V L R + ++ R + ++ E + R
Sbjct: 131 DIHRVLPGKPTTTSDELKRGIINPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHR 190
Query: 386 WLQPRLAVPRQASTRVPRTPAKCCSPIPLRSNSVVCRSNSFE 261
+ LAV + S +T C + SNS+ RS SF+
Sbjct: 191 TV---LAVNIEKSENETKT----CKKYAISSNSLGSRSRSFQ 225
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 325 PSAAAPFPCVPTQS 284
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,598
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 82
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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