Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_O13
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.23 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.31 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.31 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.31 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.54 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.72 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 378 GCSTWLVSSERLWRPDVVLLN 440
           G  T  V SE +W PD+VL N
Sbjct: 91  GVDTLHVPSEHIWLPDIVLYN 111


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLN 440
           V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLN 440
           V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLN 440
           V S+ +WRPD+VL N
Sbjct: 101 VPSDHIWRPDIVLYN 115


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 378 GCSTWLVSSERLWRPDVVLLN 440
           G +   V SE +W PD+VL N
Sbjct: 91  GVTELYVPSEHIWLPDIVLYN 111


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 378 GCSTWLVSSERLWRPDVVLLN 440
           G     V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 405 ERLWRPDVVLLNAXXXTXGDYXLR 476
           +++W+PD+VL N      G+Y +R
Sbjct: 106 DKVWKPDIVLFN---NADGNYEVR 126


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 63  ITPNKLWKPDILMYNS 78


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 63  ITPNKLWKPDILMYNS 78


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 63  ITPNKLWKPDILMYNS 78


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 63  ITPNKLWKPDILMYNS 78


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 63  ITPNKLWKPDILMYNS 78


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 63  ITPNKLWKPDILMYNS 78


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 131 ITPNKLWKPDILMYNS 146


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 326 LQMNWIDKRLSWNAGXVG 379
           L++ W+D  L WN    G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           ++  +LW+PD+++ N+
Sbjct: 131 ITPNKLWKPDILMYNS 146


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLNA 443
           +   RLW+PDV++ N+
Sbjct: 100 IPPHRLWKPDVLMYNS 115


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 396 VSSERLWRPDVVLLN 440
           V   R+WRPD +L N
Sbjct: 82  VPYNRVWRPDTILYN 96


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 405 ERLWRPDVVLLN 440
           ER+WRPD    N
Sbjct: 115 ERIWRPDTYFYN 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,438
Number of Sequences: 438
Number of extensions: 2391
Number of successful extensions: 37
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)