Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_O09
(829 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 51 2e-08
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 51 2e-08
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 50 3e-08
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 49 6e-08
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 48 8e-08
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 48 8e-08
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 46 6e-07
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 45 7e-07
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 42 5e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 7e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 9e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 40 3e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 36 5e-04
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 36 5e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 36 5e-04
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 36 5e-04
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 36 6e-04
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 33 0.004
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 33 0.004
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 33 0.004
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 31 0.010
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 31 0.013
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 29 0.052
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 24 2.0
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 24 2.0
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 24 2.0
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 24 2.0
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 50.8 bits (116), Expect = 2e-08
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
V S+ +WRPD+VL N A A +A + + G V W + + ++ +P D
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDE 164
Query: 501 QTCTFKFGSRMHNSDEMDFR 560
QTC KFGS ++ ++D R
Sbjct: 165 QTCVLKFGSWTYDGFKVDLR 184
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 50.8 bits (116), Expect = 2e-08
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
V S+ +WRPD+VL N A A +A ++ G V W + + ++ +P D
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDE 160
Query: 501 QTCTFKFGSRMHNSDEMDFR 560
QTC KFGS ++ ++D R
Sbjct: 161 QTCVMKFGSWTYDGFQVDLR 180
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 49.6 bits (113), Expect = 3e-08
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +3
Query: 333 ERLWRPDVVLLNAAATTAGDYALRAR----VSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
+++W+PD+VL N A G+Y +R + + NG V W+ + ++ + +P D
Sbjct: 106 DKVWKPDIVLFNNAD---GNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQ 162
Query: 501 QTCTFKFGSRMHNSDEM 551
QTC KFGS N D++
Sbjct: 163 QTCIMKFGSWTFNGDQV 179
Score = 23.8 bits (49), Expect = 2.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 173 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNA---GGMGLQHL 319
K+ VN L ++ N+ E ++ L+ W D +L W+ GG+G+ L
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 48.8 bits (111), Expect = 6e-08
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +3
Query: 306 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISM 473
G V SE +W PD+VL N A G+Y + +A + G VSW + +
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNAD---GNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEI 160
Query: 474 QLDNWPNDMQTCTFKFGSRMHNSDEMDFR 560
++ +P D Q+C KFGS +N ++D +
Sbjct: 161 NVEYFPFDEQSCIMKFGSWTYNGAQVDLK 189
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 48.4 bits (110), Expect = 8e-08
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISMQLDNWP 491
V S+ +WRPD+VL N A G+Y + +A V +G V W + S+ ++ +P
Sbjct: 105 VPSDHIWRPDIVLYNNAD---GNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFP 161
Query: 492 NDMQTCTFKFGSRMHNSDEMDFR 560
D+QTC K GS ++ ++D R
Sbjct: 162 YDVQTCVLKLGSWTYDGFKVDLR 184
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 48.4 bits (110), Expect = 8e-08
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 300 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNGSVSWIKRLDISTPISM 473
E+G T L V SE +W PD+VL N A G + +A + G V W + +
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEI 147
Query: 474 QLDNWPNDMQTCTFKFGSRMHNSDEMDFRD*QKNI 578
+ +P D QTC KFGS ++ ++D + +N+
Sbjct: 148 DVRYFPFDQQTCFMKFGSWTYDGIQIDLKHINQNM 182
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.6 bits (103), Expect = 6e-07
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +3
Query: 306 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISM 473
G T V SE +W PD+VL N A G+Y + +A + + G V W + +
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNAD---GNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEI 147
Query: 474 QLDNWPNDMQTCTFKFGSRMHNSDEMDFR 560
++ +P D QTC KFGS ++ +D R
Sbjct: 148 DVEYFPFDEQTCFMKFGSWTYDGYTVDLR 176
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 45.2 bits (102), Expect = 7e-07
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
+ RLW+PDV++ N+A G Y V NNG+ ++ + + + +P D
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDD 159
Query: 501 QTCTFKFGSRMHNSDEMDFR 560
Q C KFGS ++ ++D +
Sbjct: 160 QRCEMKFGSWTYDGFQLDLQ 179
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.4 bits (100), Expect = 1e-06
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V++NGS ++ + + + +P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 191 QHCDMKFGSWTYDGNQVD 208
Score = 24.6 bits (51), Expect = 1.1
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +2
Query: 125 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGGM 304
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 305 G 307
G
Sbjct: 124 G 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.4 bits (100), Expect = 1e-06
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V++NGS ++ + + + +P D
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 190
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 191 QHCDMKFGSWTYDGNQVD 208
Score = 24.6 bits (51), Expect = 1.1
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +2
Query: 125 STRSSQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGGM 304
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 305 G 307
G
Sbjct: 124 G 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.0 bits (99), Expect = 2e-06
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V++NGS ++ + + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 123 QHCDMKFGSWTYDGNQVD 140
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V+++GS ++ + M + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDD 122
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 123 QHCDMKFGSWTYDGNQVD 140
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V+++GS ++ + M + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDD 122
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 123 QHCDMKFGSWTYDGNQVD 140
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 42.7 bits (96), Expect = 4e-06
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 494
V S+ +W PD+ + N+ T G V ++GSVS + + + +WP
Sbjct: 119 VKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPY 178
Query: 495 DMQTCTFKFGSRMHNSDEMD 554
D C FGS +H+ +E++
Sbjct: 179 DTHRCRINFGSWVHSGEEVN 198
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 42.3 bits (95), Expect = 5e-06
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 333 ERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 503
ER+WRPD N + + R+S +G + + RL I M+L N+P D Q
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 504 TCTFKFGS 527
+C GS
Sbjct: 175 SCPLILGS 182
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.9 bits (94), Expect = 7e-06
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V+++GS ++ + + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDD 122
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 123 QHCDMKFGSWTYDGNQVD 140
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.5 bits (93), Expect = 9e-06
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V+++GS ++ + + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDD 122
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 123 QHCDMKFGSWTYDGNQVD 140
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.5 bits (93), Expect = 9e-06
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
++ +LW+PD+++ N+A G Y V+++GS ++ + + + +P D
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDD 122
Query: 501 QTCTFKFGSRMHNSDEMD 554
Q C KFGS ++ +++D
Sbjct: 123 QHCDMKFGSWTYDGNQVD 140
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 212 NIRESESTVRILADLQMNWIDKRLSWNAGGMG 307
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 336 RLWRPDVVLLNAAAT---TAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQT 506
R+W+PD N + T R+ +G V + RL I M L+N+P D Q
Sbjct: 84 RIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQR 143
Query: 507 CTFKFGS 527
C +FGS
Sbjct: 144 CPLQFGS 150
Score = 22.2 bits (45), Expect = 6.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 215 IRESESTVRILADLQMNWIDKRLSWNAG 298
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 5e-05
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTAGDYALRARV--SNNGSVSWIKRLDISTPISMQLDNWPND 497
V R+WRPD +L N A + V S+ G V W+ + + ++ +P D
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFD 141
Query: 498 MQTCTFKFGSRMHNSDEMD 554
Q C K+ S ++ +++
Sbjct: 142 EQRCVLKWASWTYDGYQLE 160
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 580 CIFFCQSRKSISSLLCILEPNLNV 509
C+FF + S + +LC P+ N+
Sbjct: 434 CVFFLTTIVSTTVILCGSPPSANI 457
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 35.9 bits (79), Expect = 5e-04
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +3
Query: 333 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 503
+ +WRPD NA + T + + + ++ ++ +L + +M +P+D Q
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 504 TCTFKFGSRMHNSDEMDFR 560
C + S H +DEM F+
Sbjct: 176 ECKLQMESLSHTTDEMIFQ 194
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 321 LVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWP 491
L + R+W PD+ N + + R+ NGSV + R+ ++ M L +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 492 NDMQTCTFKFGSRMHNSDEMDF 557
D Q C+ + S +D++ F
Sbjct: 169 LDRQVCSLRMASYGWTTDDLVF 190
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 321 LVSSERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWP 491
L + R+W PD+ N + + R+ NGSV + R+ ++ M L +P
Sbjct: 109 LTDASRVWMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYP 168
Query: 492 NDMQTCTFKFGSRMHNSDEMDF 557
D Q C+ + S +D++ F
Sbjct: 169 LDRQVCSLRMASYGWTTDDLVF 190
Score = 23.8 bits (49), Expect = 2.0
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 179 VVNLTLHLRH-ANIRESESTVRILADLQMNWIDKRLSWNAGGMGLQHL 319
+V + L +R A I + + + + W+D+RL +N G L++L
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYL 107
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +3
Query: 330 SERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWPNDM 500
+E++W PD N + D R R+S +GSV++ R + M L +P D
Sbjct: 113 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDS 172
Query: 501 QTCTFKFGS 527
Q CT + S
Sbjct: 173 QNCTVEIES 181
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 35.5 bits (78), Expect = 6e-04
Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 339 LWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 509
+WRPD NA T + ++ + ++ ++ ++ +L + +M+ +++P+D Q C
Sbjct: 87 IWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQIC 146
Query: 510 TFKFGSRMHNSDEMDF 557
+ S H + ++ F
Sbjct: 147 SMMIESLSHTTQDLVF 162
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.7 bits (71), Expect = 0.004
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +3
Query: 306 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 458
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 459 TPISMQLDNWPNDMQTCTFKFGS 527
M L +P D Q C + S
Sbjct: 136 ASCPMNLQYFPMDRQLCHIEIES 158
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.7 bits (71), Expect = 0.004
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +3
Query: 306 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 458
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 459 TPISMQLDNWPNDMQTCTFKFGS 527
M L +P D Q C + S
Sbjct: 136 ASCPMNLQYFPMDRQLCHIEIES 158
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 32.7 bits (71), Expect = 0.004
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +3
Query: 306 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 458
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 18 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 74
Query: 459 TPISMQLDNWPNDMQTCTFKFGS 527
M L +P D Q C + S
Sbjct: 75 ASCPMNLQYFPMDRQLCHIEIES 97
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 31.5 bits (68), Expect = 0.010
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +3
Query: 324 VSSERLWRPDVVLLNAAATTAGDY---ALRARVSNNGSVSWIKRLDISTPISMQLDN--W 488
V S +W PD+V+ ++ + D ++ V N+G++ + TP+ + D+ W
Sbjct: 110 VKSYEIWVPDIVM-HSVTSVGIDLEMPSVECIVFNSGTILCVP-FTTYTPVC-EYDHTWW 166
Query: 489 PNDMQTCTFKFGSRMHNSDEM 551
P D+ CT S H S+E+
Sbjct: 167 PYDILNCTIHIASWSHGSNEI 187
Score = 25.8 bits (54), Expect = 0.49
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 182 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 295
++ L ++H N+ E TV L++ W L+W +
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.013
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 339 LWRPDVVLLN--AAATTAGDYA-LRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 509
+W P V + N ++A T + + + +G V RL + ++L+ +P D+Q C
Sbjct: 97 IWTPTVYVSNEPSSAITGNNVKDVLVSIDPSGMVRLNTRLQATLNCGLRLEKFPFDVQEC 156
Query: 510 TFKFGSRMHNSDEM 551
F S HN +M
Sbjct: 157 PLIFESWTHNVLDM 170
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 29.1 bits (62), Expect = 0.052
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +3
Query: 333 ERLWRPDVVLLNAAATTAGDYALRARVSN-----NGSVSWIKRLDISTPISMQLDNWPND 497
+ LW+PD LNA + AL + S+ N +V + R+ M+ +P D
Sbjct: 69 DSLWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMD 126
Query: 498 MQTCTFKFGSRMHNSDEMDFR 560
+Q C S ++ ++ R
Sbjct: 127 IQICPIYIESFSYHKQKLRLR 147
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 218 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 257
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 408 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 527
R+ NG+V+++ R + +L+ +P D C+F S
Sbjct: 167 RIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIES 206
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,148
Number of Sequences: 438
Number of extensions: 5040
Number of successful extensions: 77
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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