Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_O05
(869 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 4e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 46 3e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 46 3e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 44 2e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 4e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 42 7e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 39 7e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 7e-05
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 32 0.008
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 31 0.018
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 30 0.024
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 25 1.2
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 6.4
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 49.6 bits (113), Expect = 4e-08
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Frame = +2
Query: 68 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 226
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 227 VRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
+ L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMD 545
D QTC KFGS ++ ++D
Sbjct: 155 DQQTCFMKFGSWTYDGIQID 174
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.4 bits (105), Expect = 3e-07
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 277
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 278 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 418
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 189 DDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.4 bits (105), Expect = 3e-07
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 277
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 278 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 418
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 189 DDQHCDMKFGSWTYDGNQVDLVL 211
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 45.6 bits (103), Expect = 6e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 377 GDYALRARVSNNGS 418
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.2 bits (102), Expect = 8e-07
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Frame = +2
Query: 59 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 217
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 218 ESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 364
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +2
Query: 86 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 250
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 251 MNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVL 352
+ W L W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 377 GDYALRARVSNNGS 418
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLVL 143
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 377 GDYALRARVSNNGS 418
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLVL 143
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 377 GDYALRARVSNNGS 418
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLVL 143
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 377 GDYALRARVSNNGS 418
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLVL 143
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 203 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 377 GDYALRARVSNNGS 418
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D Q C KFGS ++ +++D V+
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.6 bits (98), Expect = 2e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +2
Query: 86 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 244
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 245 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 22.2 bits (45), Expect = 6.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMD 545
D QTC KFGS ++ ++D
Sbjct: 159 DEQTCVMKFGSWTYDGFQVD 178
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 43.6 bits (98), Expect = 2e-06
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Frame = +2
Query: 65 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 229
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 230 RILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARV 403
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 404 SNNGS 418
NNG+
Sbjct: 131 KNNGT 135
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 42.7 bits (96), Expect = 4e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLX 277
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 278 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
WN E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 22.6 bits (46), Expect = 4.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMD 545
D Q+C KFGS +N ++D
Sbjct: 168 DEQSCIMKFGSWTYNGAQVD 187
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 41.9 bits (94), Expect = 7e-06
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 259
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 260 IDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLN 358
+D+RL + G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 27.1 bits (57), Expect = 0.23
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 435 RLDISTPISMQLDNWXNDMQTCTFKFGS 518
RL I M L+N+ D Q C +FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 277
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 278 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 21.8 bits (44), Expect = 8.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 459 SMQLDNWXNDMQTCTFKFGS 518
S+ ++ + D+QTC K GS
Sbjct: 154 SIDVEFFPYDVQTCVLKLGS 173
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 113 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 277
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 278 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 364
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 21.8 bits (44), Expect = 8.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 486 DMQTCTFKFGS 518
D QTC KFGS
Sbjct: 163 DEQTCVLKFGS 173
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 164 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWR 337
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 338 PDVVLLNAAATTAGDYALR 394
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
Score = 25.0 bits (52), Expect = 0.91
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 486 DMQTCTFKFGSRMHNIDEMDXVI 554
D QTC KFGS N D++ +
Sbjct: 161 DQQTCIMKFGSWTFNGDQVSLAL 183
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 167 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPD 343
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 344 VVLLNAA 364
+L N A
Sbjct: 92 TILYNNA 98
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.9 bits (69), Expect = 0.008
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 259
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 260 IDKRLXWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 412
D RL + G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 413 GSVS 424
GS++
Sbjct: 124 GSIT 127
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.018
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Frame = +2
Query: 92 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 259
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 260 IDKRLXWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 412
D RL + G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 413 GSVS 424
GS++
Sbjct: 124 GSIT 127
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 30.3 bits (65), Expect = 0.024
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +2
Query: 101 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 265
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 266 KRLXWNAGEWGCSTWLVSSERLWRPDVVLLN 358
RL + S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 26.6 bits (56), Expect = 0.30
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 474 NWXNDMQTCTFKFGSRMHNIDEMDXVIDXR 563
+W D C FGS +H+ +E++ +D +
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKK 204
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 435 RLDISTPISMQLDNWXNDMQTCTFKFGSRMHNIDEM 542
RL + ++L+ + D+Q C F S HN+ +M
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDM 170
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.2 bits (45), Expect = 6.4
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 435 RLDISTPISMQLDNWXNDMQTCTFKFGSRMHNIDEM 542
+L + +M + +D Q C + S H DEM
Sbjct: 156 KLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEM 191
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,067
Number of Sequences: 438
Number of extensions: 3929
Number of successful extensions: 66
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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