Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_O01
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   190   2e-49
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   189   4e-49
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   4.2  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   7.4  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   9.8  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  190 bits (463), Expect = 2e-49
 Identities = 91/154 (59%), Positives = 104/154 (67%)
 Frame = +2

Query: 101 LSVARPLXSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 280
           ++ ARP  S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 281 HQTSAESWGTGRAVARIPRVRGGGTHGSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 460
           HQTSAESWGTGRA+ARIPRV GGGTH SGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 461 XXXXXXXXXXXXXXXXXXQAXGHIIEKIPELPLV 562
                              A GH IE+IPE+PLV
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLV 153


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  189 bits (461), Expect = 4e-49
 Identities = 90/154 (58%), Positives = 104/154 (67%)
 Frame = +2

Query: 101 LSVARPLXSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 280
           ++ ARP  S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 281 HQTSAESWGTGRAVARIPRVRGGGTHGSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 460
           HQTSAESWGTGRA+ARIPRV GGGTH SGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 461 XXXXXXXXXXXXXXXXXXQAXGHIIEKIPELPLV 562
                              A GH IE+IPE+PLV
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLV 153


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 362 THEYHHHGHAEFGRQH 315
           TH+Y HH H   G  H
Sbjct: 19  THDYDHHNHDHHGHDH 34


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 131 TPTXKVGLPIDSFRYFSEAIPLKY-TLIAVI 42
           TP     LP+ SF Y +  +PL Y TL+AV+
Sbjct: 183 TPPKLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 162 APCTVSLFSEYTDXKGRATDRLISLL 85
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 398 HHDTCYRRH-PDRTHEYHHHGHA 333
           H    +RRH P RTH   HH H+
Sbjct: 147 HRHGSHRRHEPYRTHLSRHHRHS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,399
Number of Sequences: 5004
Number of extensions: 47774
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)