Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_N24
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   1.2  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    26   8.4  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   8.4  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = -2

Query: 375 FSCQQLE*YFLLVKKALT-LMS--ATYLEVGPAVQRTLSIIPDAVLLITAPMISSPVFTL 205
           F+  QLE  F ++ K L+ LM+  +TY      +  +LS +  AVL++  P     +  +
Sbjct: 88  FTLSQLEDIFQVILKILSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNI 147

Query: 204 SKKCLNLAVLSTFKNV 157
            +   +LA   T KNV
Sbjct: 148 FRLFFDLARKGTTKNV 163


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/71 (23%), Positives = 36/71 (50%)
 Frame = -2

Query: 285 VQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFKNVSNGGINAYKFFFSQHEV 106
           + R++S+ P     I+ P ISS    L KK  +  + +TF + +N  +N       +H +
Sbjct: 74  MNRSISVPPTN---ISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMNEASCEDVRHSL 130

Query: 105 MLLRFQKNSVN 73
           + +   K++++
Sbjct: 131 LQIIESKSNLS 141


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 74  LTEFFWKRNNITSCWEKK-NLYALMPPFET 160
           +T   W RN+I S W K   L  + PP  T
Sbjct: 234 MTNSSWTRNHIASLWGKDIQLSVVFPPCNT 263


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 146 PPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 277
           P F  FLN+DK       F+  +  EL  G++  R  S +  KV
Sbjct: 35  PSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKV 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,434
Number of Sequences: 5004
Number of extensions: 58821
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)