Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_N23
(856 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 44 2e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 42 1e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 41 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 3e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 39 5e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 5e-05
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.006
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 31 0.014
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 29 0.055
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 29 0.055
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 26 0.51
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 25 0.67
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 1.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 2.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 2.1
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 2.1
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 4.7
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 4.7
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 4.7
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 4.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.3
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 43.6 bits (98), Expect = 2e-06
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +2
Query: 83 STRSSQRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 262
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 263 -GCSTWLVSSERLWRPDVVLLNAA 331
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
Score = 27.9 bits (59), Expect = 0.13
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT + V++NGS ++ + + + + D Q C KFGS ++ +++D V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 43.6 bits (98), Expect = 2e-06
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +2
Query: 83 STRSSQRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW 262
S + +R + + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 263 -GCSTWLVSSERLWRPDVVLLNAA 331
G ++ +LW+PD+++ N+A
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSA 147
Score = 27.9 bits (59), Expect = 0.13
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT + V++NGS ++ + + + + D Q C KFGS ++ +++D V+
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 211
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 QRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 274
+R + + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 275 WLVSSERLWRPDVVLLNAA 331
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
Score = 27.9 bits (59), Expect = 0.13
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT ++ V+++GS ++ + M + + D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 QRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 274
+R + + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 275 WLVSSERLWRPDVVLLNAA 331
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
Score = 26.6 bits (56), Expect = 0.29
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT ++ V+++GS ++ + + + + D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 QRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 274
+R + + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 275 WLVSSERLWRPDVVLLNAA 331
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
Score = 27.1 bits (57), Expect = 0.22
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT ++ V+++GS ++ + + + + D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 QRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 274
+R + + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 275 WLVSSERLWRPDVVLLNAA 331
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
Score = 26.6 bits (56), Expect = 0.29
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT ++ V+++GS ++ + + + + D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 QRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 274
+R + + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 275 WLVSSERLWRPDVVLLNAA 331
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
Score = 28.3 bits (60), Expect = 0.095
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT ++ V+++GS ++ + M + + D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 QRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCST 274
+R + + ++ +TL + ++ E + A L++ W+D L WN E+ G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60
Query: 275 WLVSSERLWRPDVVLLNAA 331
++ +LW+PD+++ N+A
Sbjct: 61 LRITPNKLWKPDILMYNSA 79
Score = 29.1 bits (62), Expect = 0.055
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 345 GTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI 521
GT ++ V++NGS ++ + + + + D Q C KFGS ++ +++D V+
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQVDLVL 143
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 41.5 bits (93), Expect = 1e-05
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 101 RTIGSSPPDSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CST 274
R +G++ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 275 WLVSSERLWRPDVVLLNAA 331
V SE +W PD+VL N A
Sbjct: 95 LHVPSEHIWLPDIVLYNNA 113
Score = 25.0 bits (52), Expect = 0.89
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 348 TTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
T ++ + + + G V W + + ++ + D QTC KFGS ++ +D
Sbjct: 120 TIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYTVD 174
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 40.7 bits (91), Expect = 2e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 134 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 301
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 302 RPDVVLLNAA 331
PD+VL N A
Sbjct: 104 LPDIVLYNNA 113
Score = 29.1 bits (62), Expect = 0.055
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 348 TTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
TT++ + + G V W + + + + D QTC KFGS ++ ++D
Sbjct: 120 TTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 40.3 bits (90), Expect = 2e-05
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 212 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 331
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 27.9 bits (59), Expect = 0.13
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 348 TTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
T + + ++ G V W + + ++ + D QTC KFGS ++ ++D
Sbjct: 124 TLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 131 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 304
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 305 PDVVLLNAA 331
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
Score = 28.3 bits (60), Expect = 0.095
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 348 TTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
T ++ + V +G V W + S+ ++ + D+QTC K GS ++ ++D
Sbjct: 128 TLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 131 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 304
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 305 PDVVLLNAA 331
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
Score = 27.9 bits (59), Expect = 0.13
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 348 TTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
T + + + + G V W + + ++ + D QTC KFGS ++ ++D
Sbjct: 128 TLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVD 182
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.5 bits (88), Expect = 4e-05
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 212 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 331
++ W D +L WN E+G L V SE +W PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 31.1 bits (67), Expect = 0.014
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +3
Query: 348 TTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
T ++ + + G VSW + + ++ + D Q+C KFGS +N ++D
Sbjct: 133 TLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVD 187
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 39.1 bits (87), Expect = 5e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 131 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 304
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 305 PDVVLLNAAATTAGDYALR 361
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
Score = 34.3 bits (75), Expect = 0.001
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 378 NGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVI--DKRIYXMXE- 548
NG V W+ + ++ + + D QTC KFGS N D++ + +K + +
Sbjct: 136 NGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDY 195
Query: 549 --SRAWDVTDL 575
S WD+ ++
Sbjct: 196 WKSGTWDIINV 206
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 39.1 bits (87), Expect = 5e-05
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 339 PPGTTLSASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFV 518
PP T L V ++GSVS + + + +W D C FGS +H+ +E++
Sbjct: 145 PPTTCL----VFSSGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEEVNIF 200
Query: 519 IDKRIYXM 542
+DK+ + M
Sbjct: 201 LDKKGFHM 208
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 5e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 134 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 310
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 311 VVLLNAA 331
+L N A
Sbjct: 92 TILYNNA 98
Score = 23.4 bits (48), Expect = 2.7
Identities = 10/48 (20%), Positives = 23/48 (47%)
Frame = +3
Query: 369 VSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
VS+ G V W+ + + ++ + D Q C K+ S ++ +++
Sbjct: 113 VSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWASWTYDGYQLE 160
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 98 QRTIGSSPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTW 277
+R +G+ + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 278 L-VSSERLWRPDVVLLNAA 331
L + RLW+PDV++ N+A
Sbjct: 98 LRIPPHRLWKPDVLMYNSA 116
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +3
Query: 369 VSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMD 512
V NNG+ ++ + + + + D Q C KFGS ++ ++D
Sbjct: 130 VKNNGTCLYVPPGIFKSTCKIDITWFPFDDQRCEMKFGSWTYDGFQLD 177
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 37.5 bits (83), Expect = 2e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 140 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 316
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 317 L 319
+
Sbjct: 122 M 122
Score = 22.2 bits (45), Expect = 6.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 444 WXNDMQTCTFKFGSRMHNSDEM 509
W D+ CT S H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.3 bits (70), Expect = 0.006
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 173 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 325
I E + T + + +W+D+RL++ G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 31.9 bits (69), Expect = 0.008
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGS 485
R+ +G V + RL I M L+N+ D Q C +FGS
Sbjct: 111 RLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 31.1 bits (67), Expect = 0.014
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGS 485
R+S +G + + RL I M+L N+ D Q+C GS
Sbjct: 143 RISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGS 182
Score = 28.3 bits (60), Expect = 0.095
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 215 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 325
+ +W D RLS+ S + ER+WRPD N
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.1 bits (62), Expect = 0.055
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFV 518
R+ NGSV + R+ ++ M L + D Q C+ + S +D++ F+
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFL 191
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.1 bits (62), Expect = 0.055
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFV 518
R+ NGSV + R+ ++ M L + D Q C+ + S +D++ F+
Sbjct: 141 RIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLVFL 191
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 25.8 bits (54), Expect = 0.51
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 384 SVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFVID 524
++ ++ +L + +M + +D Q C + S H +DEM F D
Sbjct: 150 TILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWD 196
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 25.4 bits (53), Expect = 0.67
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGS 485
R+S +GSV++ R + M L + D Q CT + S
Sbjct: 142 RLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIES 181
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 24.2 bits (50), Expect = 1.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 369 VSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEM 509
+ +G V RL + ++L+ + D+Q C F S HN +M
Sbjct: 124 IDPSGMVRLNTRLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDM 170
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGS 485
R+ ++GS++ RL I+ M L + D Q C + S
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
Score = 21.8 bits (44), Expect = 8.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1
Query: 58 NATSLSLMIDSLLATYDRELSP 123
N ++S ++DS +YD+ + P
Sbjct: 8 NDVNISAILDSFSVSYDKRVRP 29
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 23.8 bits (49), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGS 485
R+ ++GS++ RL I+ M L + D Q C + S
Sbjct: 119 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 158
Score = 21.8 bits (44), Expect = 8.3
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +1
Query: 58 NATSLSLMIDSLLATYDRELSP 123
N ++S ++DS +YD+ + P
Sbjct: 8 NDVNISAILDSFSVSYDKRVRP 29
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 23.8 bits (49), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 366 RVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGS 485
R+ ++GS++ RL I+ M L + D Q C + S
Sbjct: 58 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES 97
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 22.6 bits (46), Expect = 4.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 360 ASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFV 518
A R+ NG+V+++ R + +L+ + D C+F S + + +V
Sbjct: 165 ALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 217
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.6 bits (46), Expect = 4.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 360 ASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFV 518
A R+ NG+V+++ R + +L+ + D C+F S + + +V
Sbjct: 165 ALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 217
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.6 bits (46), Expect = 4.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 360 ASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFV 518
A R+ NG+V+++ R + +L+ + D C+F S + + +V
Sbjct: 216 ALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 268
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.6 bits (46), Expect = 4.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 360 ASRVSNNGSVSWIKRLDISTPISMQLDNWXNDMQTCTFKFGSRMHNSDEMDFV 518
A R+ NG+V+++ R + +L+ + D C+F S + + +V
Sbjct: 165 ALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYV 217
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 277 PSAAAPFPCVPTQS 236
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,926
Number of Sequences: 438
Number of extensions: 4527
Number of successful extensions: 89
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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