Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_N17
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   2.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 799 FXLGKHRIXQG*VSPDV 749
           F +G+HRI +G  +PD+
Sbjct: 404 FVVGQHRILKGPANPDI 420


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 799 FXLGKHRIXQG*VSPDV 749
           F +G+HRI +G  +PD+
Sbjct: 110 FVVGQHRILKGPANPDI 126


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 264 MVTASTISFLLIFEPGRSGSLTTWVI 187
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 579 PSSSCHFLLALVKAFFLHLYLI 514
           P+ S H+LLAL+   F  L L+
Sbjct: 43  PNPSLHYLLALLYILFTFLALL 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,983
Number of Sequences: 438
Number of extensions: 4695
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)