Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_N16
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    28   1.6  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    28   2.1  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   4.8  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    26   6.4  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = -3

Query: 350 HKRSEDTSQVLQPHXPCVPT-QSFVDPIHLKICLYSHGGPRTHEC 219
           H  S  TS        C    Q F  P  LKI  YSH G R   C
Sbjct: 454 HTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVC 498


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 239 HRANTGRSSNELDRQTTELERR 304
           H+ + GR+  ELDR+ T+L++R
Sbjct: 21  HQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 153 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNXI 52
           Y    ES + D+ +  SH+ A +I Q  R+G  +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRL 96


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 215 ANIRESEVHRANTGRSSNELDRQT-TELERRGSGAAAL 325
           A IRES V RA T R  ++LD+   +++   G+G+A L
Sbjct: 52  APIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,854
Number of Sequences: 5004
Number of extensions: 51225
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)