Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_N14
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    28   0.13 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    28   0.13 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   4.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 30  CWSTGFVGLALAWCTYYILVTL 95
           CW+  +  + LAW  +Y+LV+L
Sbjct: 109 CWTNIYYIIILAWALFYLLVSL 130


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 30  CWSTGFVGLALAWCTYYILVTL 95
           CW+  +  + LAW  +Y+LV+L
Sbjct: 162 CWTNIYYIIILAWALFYLLVSL 183


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -2

Query: 214 TPSKTMSLLIPDLINNMLS*QFTLTLVQL*PVRTTVTESHNVTRI**VHQASASPTNPVD 35
           TP + +S  +     ++L  +  +T V+L  V  T    HN   +  V    AS TNP+D
Sbjct: 97  TPPEAVSYNVAVPTKSILEKKPDVTTVEL--VDATDPGEHNGDTVTDVEAGLASRTNPLD 154

Query: 34  QQCSR 20
              S+
Sbjct: 155 DSISQ 159


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 204  LLGVQQDNVYPQAYIRSEIRTLLSLA 281
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +3

Query: 30  CWSTGFVGLALAWCTYYILVTL 95
           CW   +  + LAW  +Y  +++
Sbjct: 71  CWMNVYYIVILAWAIFYFFMSM 92


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +1

Query: 265 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 384
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 233 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 278


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 659 YNSSSSHXLKNDSCRNY 609
           Y S+SSH L+  S R Y
Sbjct: 442 YPSTSSHILQQPSIRTY 458


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +1

Query: 265 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 384
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 109 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,591
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)