Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_N12
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.80
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 1.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.4
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.4
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.6
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.5
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 9.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 9.9
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.80
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 278 TGTETKSSSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 449 DVTVEGVNVLATPSSS 496
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 467 VNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPNSIHQ---PPQT*HPFPSIPX 637
V +++ SSS + +G + H ++LP +G + ++ H PPQ+ + S+P
Sbjct: 166 VATISSSSSSHLDMGAIHPPHHSSLPPHMGVDPSTMADAHNAHSSLTPPQS--GYSSMPS 223
Query: 638 TPY 646
PY
Sbjct: 224 LPY 226
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 260 RLYFDLTGTETKSSSVTVQSLPNVSSIIKGYRD-AYLVN 373
R+Y L T +SS + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 529 SSHPPLRSRLHQPDHQ-IPEFHTPTTPDLTSIS 624
+S PP S QP HQ FHTPT P T +S
Sbjct: 120 NSSPP-NSLSSQPKHQEFHLFHTPTIPRTTQLS 151
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 566 PIIKSPNSIHQPPQT*HPFPSIPXTPY*KEFAPGLKPPLSSEAPSAYLTPSSL 724
P +P S +PP + P PSIP +P PP+ S+AP PSSL
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPP------SPASAPPIPSKAPP---IPSSL 171
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 525 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 406
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 341 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/70 (24%), Positives = 27/70 (38%)
Frame = +2
Query: 278 TGTETKSSSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S+ +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VEGVNVLATP 487
V +TP
Sbjct: 540 YTSTPVTSTP 549
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 510 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 376
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 566 PIIKSPNSIHQPPQT*HPFPSIPXTPY*KEFAPGL-KPPLSSEAPSAYLTPSSL 724
P++ S+HQPP P +P P + AP + + P + P+ + P +L
Sbjct: 521 PVVPEAPSVHQPPAA-PVAPEVPSAPQ-RPAAPVVPEAPSVPQRPAVPVVPEAL 572
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 5 GMTYSWKKLCLXSFLAASAIPSLVNAFSSSKPPQTDN 115
G T+ + + L SAI L N S SKPP D+
Sbjct: 99 GGTHYYLQSLLFEDTTLSAIDKLTNDSSPSKPPHPDS 135
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 542 PCDLGYINPIIKSPNSIHQPPQT*H-PFPSIPXTPY*KEFAPGLKPP 679
P G P + +PNS+ PP + P + P T ++ P PP
Sbjct: 148 PSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPP 194
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 563 NPIIKSPNSIHQPPQT*HPFPSIPXTPY*KEFAPGLKPPLSSEAPSAYLTPSS 721
+P + SP + + P P P +P P +PPL S S++ +P S
Sbjct: 137 DPFLTSPGNKQNTVDSFRPLPETPVSPGGSLVHPLPRPPLPSSV-SSHSSPYS 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,739
Number of Sequences: 5004
Number of extensions: 63699
Number of successful extensions: 239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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