Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_N08
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 36 0.007
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.26
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 30 0.34
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 28 1.8
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 5.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 7.3
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 7.3
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 9.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 9.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 9.6
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 35.9 bits (79), Expect = 0.007
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 191 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVL 307
E +E C +C + + Y + C+H +C C+ R+R L
Sbjct: 73 EQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRAL 111
Score = 35.1 bits (77), Expect = 0.012
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 550 HMRRVHERFFCDLCVNHLKILPMKEGVIHDKNW----HIIDVKVTLMIP-TQGPSLCEXC 714
H + H +FFCDLCV + K+ + + K + D L I +G CE C
Sbjct: 191 HAKVKHHKFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFC 250
Query: 715 EKRXMDPDEL 744
D DEL
Sbjct: 251 NTHFYDDDEL 260
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 191 EAQANENTCVVCF-KNVLYYSIGECDHPVCFEC 286
E +E TC +C+ + L + ECDH C C
Sbjct: 123 EVVHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 30.3 bits (65), Expect = 0.34
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 259 LAN*VVQNVLETNYASILVRLSLRHDCCI 173
LA VVQNVL N +S+LV+ + R+ CI
Sbjct: 312 LAEPVVQNVLWVNTSSVLVQFTNRNSTCI 340
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +2
Query: 176 TTIMSEAQANENTCVVCFKNVLYYSIGE-----CDHPVCFECSTRMR 301
TT ++ AN C +CF LYY C P+C EC +R
Sbjct: 138 TTAITTIYANAMECPICF---LYYPSNFNYTRCCAQPICSECFVEIR 181
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +3
Query: 273 YVSSALLGCGCSVFRNECPICRKDLLRVVFTDSIHPYKELGNREYPDRLFERQYKIVFCS 452
Y + L C V N CP+CR + L+V D + K R YP + E+ +
Sbjct: 59 YFHNHCLESWCRV-ANTCPLCRTEFLKV---DVLEFVKGPWYRAYP--VEEKTQSVANAG 112
Query: 453 EDIKNAYENLLENRCKICDK 512
E ++ E RC IC +
Sbjct: 113 EPFED--EGSETCRCVICGR 130
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 366 DSIHPYKELGNREYPDRLFERQYKIVF---CSEDIKNAYENLLENRCKICDKI 515
+++ YK Y DRLF++ VF +KNA +++LE+ K D I
Sbjct: 193 ENLDEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVLEDLFKNYDFI 245
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 270 PYVSSALLGCGCSVFRNECPICRK 341
P +SA L C CS+F E IC K
Sbjct: 1339 PLRTSAELECVCSIFNIEKDICTK 1362
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 51 VLTSRCSSKWYLSKTNSELPRTRNL 125
++ + + W+LSKT+ E+ R R L
Sbjct: 239 IIPNDITKAWFLSKTHQEMMRKRQL 263
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 208 EYLRSLFQERFVLLNWRV*PSRMFRVLYSDAGALSSEMS 324
+Y+ ++ + F+ L WR+ P +RVLY+ ++S S
Sbjct: 502 KYIFNILAQMFLSL-WRIHPGLKYRVLYTIFAGVNSLFS 539
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 523 NGGILSQILHRFSN------KFSYAFFMSSEQN 443
NGGI+ Q+L SN KF+ FF++ + N
Sbjct: 91 NGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPN 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,600
Number of Sequences: 5004
Number of extensions: 69838
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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