Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_FL5_N08
         (810 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050477-1|AAH50477.1|  904|Homo sapiens zinc finger protein 598...    73   1e-12
BC041122-1|AAH41122.1|  209|Homo sapiens MEX3C protein protein.        33   1.2  
AY950679-1|AAY34147.1|  659|Homo sapiens MEX3C protein.                33   1.2  

>BC050477-1|AAH50477.1|  904|Homo sapiens zinc finger protein 598
           protein.
          Length = 904

 Score = 72.9 bits (171), Expect = 1e-12
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 2/125 (1%)
 Frame = +3

Query: 324 CPICRKDLLRVVFTDSIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAYENLLENRCKI 503
           C +CR++L +VVF   +  +  +   +      E++Y I F    +   Y  LL++ C  
Sbjct: 65  CAVCREELRQVVFGKKLPAFATIPIHQLQH---EKKYDIYFADGKVYALYRQLLQHECPR 121

Query: 504 CDKIPPFRNFSFAE*SHEKGS*KVFL*PLC*S-FEDFTNERRCYTRQELAHHRRKGDLDD 680
           C ++PPF  F   E  H +   ++F   LC    + FT ER+ Y+R++LA HR +GD DD
Sbjct: 122 CPELPPFSLFGDLE-QHMRRQHELFCCRLCLQHLQIFTYERKWYSRKDLARHRMQGDPDD 180

Query: 681 T-HTG 692
           T H G
Sbjct: 181 TSHRG 185



 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = +2

Query: 212 TCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQK 319
           +CV+C  ++   ++G CDHPVC+ CST+MRVLC Q+
Sbjct: 28  SCVLCCGDLEATALGRCDHPVCYRCSTKMRVLCEQR 63


>BC041122-1|AAH41122.1|  209|Homo sapiens MEX3C protein protein.
          Length = 209

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 146 NAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPV-CFECSTRM 298
           N+++ S   +T+        ++ CV+CF+N +  ++  C H + C EC+ ++
Sbjct: 135 NSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKI 186


>AY950679-1|AAY34147.1|  659|Homo sapiens MEX3C protein.
          Length = 659

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 146 NAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPV-CFECSTRM 298
           N+++ S   +T+        ++ CV+CF+N +  ++  C H + C EC+ ++
Sbjct: 585 NSYSSSNGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKI 636


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,337,314
Number of Sequences: 237096
Number of extensions: 2280920
Number of successful extensions: 4889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4886
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)