Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_FL5_N07
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 253 1e-67
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 250 1e-66
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 31 1.5
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 29 3.4
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 29 4.5
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 29 4.5
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.0
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.0
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 6.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 253 bits (620), Expect = 1e-67
Identities = 119/195 (61%), Positives = 148/195 (75%), Gaps = 1/195 (0%)
Frame = +1
Query: 61 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWE 240
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL + WE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 241 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 420
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 421 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 600
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 601 LLAREVLRLRG-VLP 642
LLAR VL++RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
Score = 35.9 bits (79), Expect = 0.039
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 651 RWDVVVDLXFYRDPEKVK 704
+WDV+VDL FYRDPE+ K
Sbjct: 198 KWDVMVDLFFYRDPEEAK 215
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 250 bits (612), Expect = 1e-66
Identities = 116/184 (63%), Positives = 142/184 (77%), Gaps = 1/184 (0%)
Frame = +1
Query: 94 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVA 273
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL + WEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 274 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 453
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 454 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 633
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 634 -VLP 642
+LP
Sbjct: 192 TILP 195
Score = 35.9 bits (79), Expect = 0.039
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 651 RWDVVVDLXFYRDPEKVK 704
+WDV+VDL FYRDPE+ K
Sbjct: 198 KWDVMVDLFFYRDPEEAK 215
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Frame = -3
Query: 816 GGXSAXKPXVQXSFQFXXQEQXXWLXVPQPVPGLXFIXSLFQGHGRXTNQPQHPSAG--- 646
GG K V F+F +E+ + P P PG I S+ G ++ P+ G
Sbjct: 11 GGRGDKKEKVPLGFRFEPKEEL--VEHPSPQPGPQAIASIASSDGEFSSPQPGPAMGTSE 68
Query: 645 --HGXHTTKPQHFTCQQPPHQTNRV 577
G +H Q PHQ ++
Sbjct: 69 EASGNKRPAEEHAAVAQRPHQQRKL 93
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 29.5 bits (63), Expect = 3.4
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 1/177 (0%)
Frame = -3
Query: 723 PGLXFIXSL-FQGHGRXTNQPQHPSAGHGXHTTKPQHFTCQQPPHQTNRVGRLGVAWDSN 547
PGL ++ + GH PQ SA T ++ R +G+ + +
Sbjct: 194 PGLKVSGNITYNGHHLNEFVPQRTSAYVSQQDWHASEMTVRETLEFAGRCQGVGIKYGRS 253
Query: 546 VHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRN 367
H + GV D+ + + L+ L R + N+ + E LD+ K+ E +
Sbjct: 254 FHHNVLGVVPYLLGSLRFDVNQYVDMLVELLRREKNEGIKPDE-DLDVFMKALALEGKQT 312
Query: 366 RRSTGVRGKLQYSTLTEGP**DDEHISGVLDGYDSTSSQNKFFPGTTQVDHMGTIST 196
K+ + DE I G+ G + + G+ +V M IST
Sbjct: 313 SLVAEYIMKILGLDICADTIVGDEMIKGISGGQKKRLTTGELLVGSARVLFMDEIST 369
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 4 WL*VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 183
+L V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 237 YLGVPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 168 PDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSH 275
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 161 TFSAPRWVVAASILVTSSSLRASTSNP 81
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 339 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 446
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 114 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSHREPR*C 293
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 294 VRHLITALRSACCTEVCR 347
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,750,944
Number of Sequences: 37544
Number of extensions: 579681
Number of successful extensions: 1446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -